barSeed - Barley Seed Development Database

Probe CUST_32372_PI390587928

Source Contig U35_36238

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_32372_PI390587928	Hv_44K_v2	ATTAAGTATCAATACAGAAGAGGTTATGGGCGACAATGATGAAATGCGGTGTTTCGTGGC	561	GeneList: yellow MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	5.352	4.732	1.517	0.447	0.112	0.101
Raw	2630.830	3569.613	1025.349	488.009	41.989	41.068

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest35	U35_36238	621	3e-25	562 - 621	100	60 / 60	plus

Contig Sequence (621 bp)

>U35_36238 621 Hv_44K_v2
CTCCTATAGGGCGAATTGGGCCCTTTCCAAGATGCTCGAGCGGCCGCTCAACTGCTGCCG
CTAAGCCTAACGCCTTAGATGAGGCGGAGCTGCTGGCGCTGCTGAGGGATGAGCAGGGTG
AGGAAGACAGGATGATCCAGACGGATATCAGCGATGAGGACCTTCTGAAGCTGATGGACC
GGAGTGACCTCACCGGCCCTGCCATGGCTCCCAATGCAGCCCATCTTGTCCCCTTGAAAG
GGCCTGGCTGGGAGGTGGTTCTGGCTTCGAAGAGTGCTGGGGGCATGCTCTCGGCGCTCA
CCAGCTGAGCCATCCTAGCAATGGCGATTCCTCGGTATTTTGATGTTTTGGCTTGTTCGT
AGCCTAATGCTTGACAGCAGTGCATTGCTTCCCCTAGGTTCAGGAGCTGATGTTCCGGCG
GGCAGTGTTCTAGGCTTATGCCCGCGCCTTCTTCCAATCTAGCTAGGCAACCTATGTCAG
ACTGTCATGGTATGCCAGATGAATCTGGAAATGGCATTGTTTTGCTGCTCTGCGATGCCT
AGATCTTTCAGGTTTTGGTGTATTAAGTATCAATACAGAAGAGGTTATGGGCGACAATGA
TGAAATGCGGTGTTTCGTGGC

Homology of Contig U35_36238 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None