barSeed - Barley Seed Development Database

Probe CUST_32370_PI390587928

Source Contig U35_12281

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_32370_PI390587928	Hv_44K_v2	TAAAGAAGGCTGAACCAAAGAAACATGGTGGTGATCACAGTAGCAATGGGAGATCTAGTC	632	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_7493.2	1814	2e-24	854 - 913	100	60 / 60	plus	ABC00203 ABC09794
MLOC	MLOC_7493.3	3187	2e-24	1467 - 1526	100	60 / 60	plus	ABC00203 ABC09794
MLOC	MLOC_7493.1	2035	2e-24	938 - 997	100	60 / 60	plus	ABC00203 ABC09794
JLOC1	JLOC1_4945.3	1452	8e-25	490 - 549	100	60 / 60	plus
JLOC1	JLOC1_4945.2	2022	8e-25	826 - 885	100	60 / 60	plus
JLOC1	JLOC1_4945.1	2053	8e-25	857 - 916	100	60 / 60	plus
Harvest21	ABC24898	814	3e-25	633 - 692	100	60 / 60	plus
Harvest35	U35_12281	814	3e-25	633 - 692	100	60 / 60	plus

Contig Sequence (814 bp)

>U35_12281 814 Hv_44K_v2
CGGGTACGAGGATGAGGTCGAGGAAGTGGAGGAGGTCGACGAGGAGGGCCACCCCGGGAG
GAGGGGACGGCGAGATGTGGGCGATGGTGGTGGCTATGGTGACGCCGGTGGGGATGACGG
GAGGGCTGGGGGCGGTGATTCGTCGGGGAAGATTTTCGTCGGAGGCGTTGCATGGGAGAC
AACTGAAGAATCATTCTCCAAGCATTTTGGGAAGTATGGGGCTATAACTGATTCTGTAAT
TATGAAGGACAAGCATACTAAGATGCCTCGTGGATTTGGATTTGTTACATTTTCTGATCC
ATCTGTAATAGACAAGGTTTTGGAGGATGAACACAATATAGATGGAAGAACGGTTGAAGT
CAAAAGGACAGTCCCGAGGGAAGAAATGTCCTCAAAAGATGGCCCCAAGACAAGAAAGAT
CTTTGTTGGTGGGCTACCATCAACACTAACTGAAGATGATTTGAGGGATCACTTTTCCTC
ATATGGCAACGTGGTTGAACATCAGATAATGGTGGATCACAGCACTGGCCGTTCGAGAGG
TTTTGGTTTTGTCACTTTTGAAAGTGAGGATTCTGTCGAAAGGGTCATATCCGAGGGAAG
AATGCGTGATCTTGGTGGGAAGCAGGTTGAAATAAAGAAGGCTGAACCAAAGAAACATGG
TGGTGATCACAGTAGCAATGGGAGATCTAGTCACTCTGGTGGTGGTGGTTACCGTAGTTC
TTACCGTAGTGGTGGAGCTGCTGCTGGTGGTGGCAGTAGCAGCGCTGGTGGCGGCGGCTA
TGGCTATGGTGCTGGTGGTCATCGGTCTGCTGCT

Homology of Contig U35_12281 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g12850.1	398	4e-109	protein\|RNA recognition motif containing protein, expressed
Brachypodium v1_2	Bradi3g08380.1	404	5e-113
Arabidopsis v10	AT3G13224.2	358	8e-72	RNA-binding (RRM/RBD/RNP motifs) family protein \| chr3:4254848-4256621 FORWARD LENGTH=358