barSeed - Barley Seed Development Database

Probe CUST_32360_PI390587928

Source Contig U35_48215

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_32360_PI390587928	Hv_44K_v2	GTACATCATTATGGATTGGACTAGTCTTTCTCGTAGCTATTCTGAATTCTCTCATTTCTT	49	GeneList: salmon MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	3.610	2.381	0.974	1.001	0.705	0.693
Raw	14267.800	14532.780	5362.507	8669.270	2108.017	2305.857

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_34223.1	778	2e-24	256 - 315	100	60 / 60	minus	None
Harvest21	ABC16480	793	3e-25	664 - 723	100	60 / 60	plus
Harvest35	U35_48215	492	3e-25	50 - 109	100	60 / 60	minus
Harvest35	U35_89	2082	3e-25	1829 - 1888	100	60 / 60	plus

Contig Sequence (492 bp)

>U35_48215 492 Hv_44K_v2
TTTTTTTTTTTTTTTTATGGGGTTACTAAATATTAACCAAATTTAATTTAAGAAATGAGA
GAATTCAGAATAGCTACGAGAAAGACTAGTCCAATCCATAATGATGTACCGGAAAATACA
ACATTTTTATTATTTGACCAACCATCAGGAGAAGCAAATACAAGGGGTACACTAATTACT
AAGACTGAGGAAGTCGCAATTAATGCAAAAACAGCTAATTGGAAAGCAATAGTCATATTT
CTAATCCTCCAAGCTACCATCAAATAAGGGGGCACCCCTTCTCCCGAAGTTACGGGGCTA
TTTTGCCGAGTTCCTTAGAGAGAGTTGTCTCGCGCCCCTAGGTATTCTCTACCTACCCAC
CTGTGTCGGTTTCGGGTACAGGTACCCTTTTGTTGAAGGTCGTTCGAGCTTTTCCTGGGA
GTATGGCATCGGTTACATACTTCAGCGCCGTAGCGCCTGGTATGAGCCTCGTGGAGAAGC
ATTGCTAGTCCA

Homology of Contig U35_48215 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None