barSeed - Barley Seed Development Database

Probe CUST_3235_PI390587928

Source Contig U35_22921

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_3235_PI390587928	Hv_44K_v2	AAGGTGGAGGAGATGTTCAAGACGGATGTGGCGGCCATCAAGTACCAGCTGCTATCCTCC	742	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_72822.6	2551	2e-24	1581 - 1640	100	60 / 60	plus	ABC22999
MLOC	MLOC_72822.3	1696	2e-24	628 - 687	100	60 / 60	plus	ABC22999
MLOC	MLOC_72822.4	2518	2e-24	1004 - 1063	100	60 / 60	minus	ABC22999
MLOC	MLOC_72822.5	2622	2e-24	1004 - 1063	100	60 / 60	minus	ABC22999
MLOC	MLOC_72822.1	1985	2e-24	1047 - 1106	100	60 / 60	minus	ABC22999
MLOC	MLOC_72822.2	2056	2e-24	1047 - 1106	100	60 / 60	minus	ABC22999
JLOC1	JLOC1_48460.3	2017	8e-25	872 - 931	100	60 / 60	plus
JLOC1	JLOC1_48460.2	2070	8e-25	925 - 984	100	60 / 60	plus
JLOC1	JLOC1_48460.1	2560	8e-25	1415 - 1474	100	60 / 60	plus
Harvest21	ABC19570	891	3e-25	743 - 802	100	60 / 60	plus
Harvest35	U35_22921	902	3e-25	743 - 802	100	60 / 60	plus

Contig Sequence (902 bp)

>U35_22921 902 Hv_44K_v2
CCGAGAATAGCCGGCCTCCTCAGATCCAGGGGCCGGTCCGCCCTGAAATCCAACCCCCCG
TCGCCCTATCCGCGGCACGGCCACGCTCGCTCGCCTGCCTGCGTCCCGCCCCCCCGATCC
CCTCTTCCCTCTTCCTCTCCTCGCAGAGGGAAGAAGGTCGATCAGCCCTCCCCGCGGATG
GGAGGACGGTCGATCCCGCACCAATAAAGCAGCGCAGCGGGCCTCTCCGCTCGCCGGGTG
GGTGGGTGGCCGGGGGATCCGCCCGTCGTTCCGTCCTTCGTCGCTGCCTAGTAGTAGTAG
CTTGATTGATTCCGTCCCAGCCCAACAATATTTCCCAGTTCCTCCGCCGCCCGTTCTTCG
CTTCCACAAGCCGCCCGGTTGGTTGGATTTAGAGAGTTCGGTTCCCCCCTTCCGGTCCAT
TCAGTACTCAGCAGATTCTTTGCGTGCTCGGCATATCCCTTTGCCTTCGATCGAGCAAGA
GATGGAACACGCGATGCCGACGATGACCGCGGAGTCCGAGGGCGGCGCGACCACCGACGA
CGACGTGCACCTTTCCCCGACCAGCGTCAGCAGCGGTGGTGGTGGTGGAGGAGGAGGCGC
ACCCAGCGTCCGCTTCAAGATACTCTGCAGCTTCGGCGGCCGCATCATGCCCCGCCCGTC
CGACGGCGCGCTCAAGTACATTGGCGGCGACACCCGCGTCCTCGCCGTGCCCCGCTCCAT
CCGCTTCCGCGATTTGAAGAAGAAGGTGGAGGAGATGTTCAAGACGGATGTGGCGGCCAT
CAAGTACCAGCTGCTATCCTCCGACGACCTCGACGTGCTCGTGTCCGTCACCTGCGACGA
GGACCTGGGCCACATGCTCGACGAGTACGACCGGTTCGAGGCGAAGCGGTCGCCGTCCGC
GT

Homology of Contig U35_22921 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None