barSeed - Barley Seed Development Database

Probe CUST_32357_PI390587928

Source Contig U35_12288

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_32357_PI390587928	Hv_44K_v2	ACGATGTTTTGCTTTGCAAGGCTATGCGCGCTCATGAATAAAAGGACAGTTATCAAAAAA	553	GeneList: paleturquoise MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	178.481	17.090	1.477	0.567	0.323	0.440
Raw	4363.810	643.581	51.869	32.069	5.493	9.485

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_79332.1	2713	7e-23	5 - 61	100	57 / 57	minus	ABC31742
MLOC	AK375202	632	3e-21	579 - 632	100	54 / 54	plus	ABC31742
Harvest21	ABC31742	623	3e-25	553 - 612	100	60 / 60	plus	ABC31742
Harvest35	U35_12288	624	3e-25	554 - 613	100	60 / 60	plus

Contig Sequence (624 bp)

>U35_12288 624 Hv_44K_v2
GCTGAACTACCTTGCTTGTTCTTAGCTTCAGCCATGGCCTTCAAGGCCTGCATCCTGATC
CTGCTCTTCCTTGCTGCTCTTCTCCATACAGGCCATGCTGGTGGCGACCCTGGGCCGTGC
AGCCTGGAGGACATCCGCGTCTCATCGGCGTTGACGGGGCGGCTGGTCCTGAATGTGCCG
GAGCACAGCGTGACGGTGGAGAACGCGTGCAAGTGCCCGCAGAGGGGCGTGGTGATGTTC
TGCAACCTCGGTGAGGTGAAAGCGGTGATCTCGGACACGACCAAGCTCCGCCTGCTGAAC
CGGGAGCAAGGGCAGTGCCTCATCAACAGCGGCTGGCCGATCTTCAACGGCAAGCCGATA
ACATTCACCTACGCCTCGAAAACGCCTCTCGAGTTCACCCTCGAAAACGCCTCGCCGGAG
TGTCGGGCGTGATCGTAGCCTTTTTTTTTAGGCAAACACACGTAGCTTTGTTACTCGGAA
GTAAGAATGTTTACTGGTGCAGAAATAGGGCCATGGGGATGATCAAGCCAAATATGGCGT
CCTATACCCAAAAACGATGTTTTGCTTTGCAAGGCTATGCGCGCTCATGAATAAAAGGAC
AGTTATCAAAAAAAAAAAAAAAAA

Homology of Contig U35_12288 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None