barSeed - Barley Seed Development Database

Probe CUST_32353_PI390587928

Source Contig U35_48219

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_32353_PI390587928	Hv_44K_v2	GGCTAAGGCATGAATTTATACTGTGAAACTACAATTTACATCTTCGAATGGAGATATCAG	28	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK364965	1690	2e-24	1564 - 1623	100	60 / 60	plus	None
MLOC	MLOC_44861.1	1484	2e-24	1414 - 1473	100	60 / 60	plus	None
JLOC1	JLOC1_29110.1	1905	8e-25	1697 - 1756	100	60 / 60	plus
Harvest35	U35_48219	509	3e-25	29 - 88	100	60 / 60	minus

Contig Sequence (509 bp)

>U35_48219 509 Hv_44K_v2
TTTTTTTTTTTTTTTTTAGAGCAAAATACTGATATCTCCATTCGAAGATGTAAATTGTAG
TTTCACAGTATAAATTCATGCCTTAGCCAGTATAAAAAGATGGAACAAGATACAGGGGAG
TCTTCCTACAGAAAACCTGTCTGCCAGTCCCTTCCATGCTCACGTCTTCTTTCGACATGC
CGTCAGGCAACTCCCAGTCGAACGAATGCAGCAAGCTAGCAAGCGTGAACTCCACGATGG
TGGCGCCCATGGGGATAGCAGGGCAGATCCGCCGCCCGGCGCCAAACGGAAGGAGCTCAT
AGTGCGATCCATAGAAATCAGTGTCGACGCCGTCAAACCTCTCCGGGTAAAACTCCTCAG
GTTTGTCCCAGCAGGCAGGGTCCCTCCCCATAGCCCACACGTTCACGAAGATCCTTGTCT
TCGCGGGGATGTCGTACCCGAGGACCTTCACATGGTCCATGGTCTCCCTAGGGACAAGCA
GCGGCGCCGGCGGGTGCAGTCGTAGTGTT

Homology of Contig U35_48219 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os12g32850.1	523	3e-56	protein\|cytochrome P450, putative, expressed
Brachypodium v1_2	Bradi2g21917.1	499	2e-54
Arabidopsis v10	AT3G26180.1	502	2e-52	\| Symbols: CYP71B20 \| cytochrome P450, family 71, subfamily B, polypeptide 20 \| chr3:9578407-9579993 REVERSE LENGTH=502