barSeed - Barley Seed Development Database

Probe CUST_3233_PI390587928

Source Contig U35_22923

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_3233_PI390587928	Hv_44K_v2	ATTAATGTACACCTGTGGAATTTGATCAGATTTGCTCAGCGCCTGTTACTAGATAAAAAA	1144	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK364463	4845	2e-24	2024 - 2083	100	60 / 60	plus	ABC04124 ABC17591
MLOC	MLOC_37946.5	3672	9e-22	3505 - 3559	100	55 / 55	plus	ABC17591
MLOC	MLOC_37946.1	1921	9e-22	1865 - 1919	100	55 / 55	plus	ABC17591
MLOC	MLOC_37946.4	1931	9e-22	1761 - 1815	100	55 / 55	plus	ABC17591
JLOC1	JLOC1_24622.4	1907	5e-22	1740 - 1794	100	55 / 55	plus
JLOC1	JLOC1_24622.3	1956	5e-22	1789 - 1843	100	55 / 55	plus
JLOC1	JLOC1_24622.2	1894	5e-22	1727 - 1781	100	55 / 55	plus
JLOC1	JLOC1_24622.1	1942	5e-22	1775 - 1829	100	55 / 55	plus
Harvest21	ABC17591	1215	3e-25	1145 - 1204	100	60 / 60	plus	ABC17591
Harvest35	U35_22923	1215	3e-25	1145 - 1204	100	60 / 60	plus

Contig Sequence (1215 bp)

>U35_22923 1215 Hv_44K_v2
GGGTGTTTGGTATTATTGGAAATCCTGTTGGACACAGTAAAAGCCCGATTTTGCATAATG
AAGCTTTCAGATCAGTGGGTTTGCATGCTGTGTATGTGCCATTTTTGGTGGATGACTTGG
CTAAATTTCTTTCAACCTACTCTTCGCCAGACTTTGCTGGCTTCAGTTGTACAATTCCCC
ACAAGGAAGCTGCAGTTAGGTGCTGTGATGAGGTCGATCCTATTGCCAGGGACATTGGAG
CTGTTAATACAATTATTAGAAAACCTGATGGGAAACTTGTAGGCTACAATACTGATTATG
TCGGTGCAATTTCTGCTATTGAAGATGGAATAAGAGCAACACAACCAACGCATTCTACCA
CGTCACCACTGGCTGGAAGGCTTTTCGTTGTTATTGGGGCTGGTGGTGCAGGGAAAGCAC
TTGCTTACGGTGCAAAAGAGAAGGGAGCAAGAGTTGTAATAGCAAACCGCACTTTCGCAC
GTGCTCAAGAACTTGGTAACTTAATTGGTGGGCCTGCTTTGACTCTTGCGGAGTTAGAAA
ACTACCATCCGGAGGAAGGGATGATTCTTGCAAACACAACAGCAATAGGAATGCATCCAA
ATGTCAATGAAACTCCTCTATCAAAGCAAGCGCTTAAATCTTATGCTGTTGTCTTCGATG
CGGTCTACACACCGAAAGAGACGAGACTTCTTAGGGAAGCTGCAGAATGTGGAGCCACAG
TTGTTAGCGGTTTGGAGATGTTCATAAGGCAAGCAATGGGTCAATTTGAGCATTTCACGG
GCATGCCAGCTCCAGATAGCTTGATGCGTGATATTGTTCTGAGAAAGACATAATAAGCGG
TTGATGGTAAATTCCGAGCGCTGGCAATTTCTGTGGACAACCCTAGTGCCGTGAAGGGAA
ACAGGAGCACATCACTCAAGCCTCGCTTGTGATAGACACATCCATGTCTGCGGGTTTTCG
CATAAGTTTTTGGATTTGGAATCAGCAATCAGTTTGAGTAGATTGTGAGATGGCCTCGCT
TGAAAATTTGTATTGTATAGCCCAAATATATTTGTTTGCCAGAAGTTGGTGCAATCAGAA
AACAGCAAGGAGGCTTCGCTTGCCAGATTGCATGAGTTTTCTAGAATACTAGTAATAGTG
ATAAATTAATGTACACCTGTGGAATTTGATCAGATTTGCTCAGCGCCTGTTACTAGATAA
AAAAAAAAAAAAAAA

Homology of Contig U35_22923 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os12g34874.3	532	8e-165	protein\|bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase,chloroplast precursor, putative, expressed
Brachypodium v1_2	Bradi4g05897.2	530	1e-165
Arabidopsis v10	AT3G06350.1	603	5e-109	\| Symbols: EMB3004, MEE32 \| dehydroquinate dehydratase, putative / shikimate dehydrogenase, putative \| chr3:1924536-1927701 REVERSE LENGTH=603