- Probe CUST_32339_PI390587928
- Source Contig U35_50535
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_32339_PI390587928 | Hv_44K_v2 | TGGACCAATCGATGTAATAATGATAAATAAAGTGTCGTGCACCATGATGTGTGATTCGAC | 537 | GeneList: black MasterList: Hordein_Function_Probe_Module |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.011 | 0.010 | 0.369 | 1.838 | 3.307 | 4.268 |
| Raw | 41.602 | 76.527 | 3904.857 | 26491.267 | 18382.233 | 25998.600 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_45609.1 | 564 | 2e-24 | 37 - 96 | 100 | 60 / 60 | minus | ABC00518 ABC00817 ABC28944 ABC32433 ABC43834 |
| JLOC1 | JLOC1_29606.1 | 580 | 8e-25 | 53 - 112 | 100 | 60 / 60 | minus | |
| Harvest21 | ABC52731 | 600 | 3e-25 | 538 - 597 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC43834 | 311 | 3e-25 | 40 - 99 | 100 | 60 / 60 | minus | ABC43834 |
| Harvest21 | ABC28953 | 205 | 3e-25 | 72 - 131 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC28944 | 154 | 3e-25 | 71 - 130 | 100 | 60 / 60 | plus | ABC28944 |
| Harvest21 | ABC00817 | 1613 | 3e-25 | 1346 - 1405 | 100 | 60 / 60 | plus | ABC00817 |
| Harvest35 | U35_50535 | 600 | 3e-25 | 538 - 597 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_22 | 1147 | 3e-25 | 1022 - 1081 | 100 | 60 / 60 | plus |
Contig Sequence (600 bp)
>U35_50535 600 Hv_44K_v2 ACCGTTACAACCTTTTCCTCAGCCCCCGCAACAAAAATATCCCGAGCAACCACAACAACC ATTTCCTTGGCAACAACCAACTATTCAGCTATATCTCCAACAACAACTGAATTCGTGCAA GGAGTTTCTCTTGCAACAGAGCAGTTGTCGGGTGATGCAGCAACAGTGTTGCCTGCAATT GGCACAGATCCCTGAACAATACAAATGCACAGCAATTGATAGCATTGTGCATGCCATCTT CATGCAGCAAGGCCAAAGACAAGGCGTGCAGATCGTGCAACAACAACCTCAGCCGCAACA GGTGGGTCAATGTGTACTCGTCCAGGGTCAGGGCGTCGCCCAACCGCAACAACTAGCTCA AATGGAAGCAATCAGAACGTTGGTGTTGCAGTCCGTTCCATCCATGTGCAACTTTAATGT CCCACCTAACTGCTCCACCATCAAAGCACCATTTGTTGGTGTAGTCACCGGTGTTGGAGG ACAATGAAAAGATGAGAGCTATAATAATTAGTACATGGATCATCGTTGCATAATCGATGG ACCAATCGATGTAATAATGATAAATAAAGTGTCGTGCACCATGATGTGTGATTCGACCAG
Homology of Contig U35_50535 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |