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Probe Details

Probe IDChipProbe Sequence (60 bp)Probe locationDifferentially Expressed
CUST_3232_PI390587928Hv_44K_v2GATGATGTGAATTCTCACTGTAAAAGAGTTAACTGCGAACATGAATCATTCATTTCAGAG671GeneList: brown
MasterList: None



Probe Values

3 dpa4 dpa5 dpa6 dpa7 dpa8 dpa
Normalized 1.8591.8571.1010.8070.4130.571
Raw 121.092184.76096.837113.34819.37030.811



Probe Sequence's BLAST hits in Barley Unigene Datasets

DatasetHitHit LengthE-valuePosition on Hit% IdentityMatchDirectionProbes on Sequence
MLOCMLOC_74127.69102e-24722 - 78110060 / 60plus None
MLOCMLOC_74127.710372e-24705 - 76410060 / 60plus None
MLOCMLOC_74127.210162e-24794 - 85310060 / 60plus None
MLOCMLOC_74127.514322e-24803 - 86210060 / 60plus None
MLOCMLOC_74127.313322e-24703 - 76210060 / 60plus None
JLOC1JLOC1_49386.112398e-25788 - 84710060 / 60plus
Harvest35U35_229247483e-25672 - 73110060 / 60plus



Contig Sequence (748 bp)

>U35_22924 748 Hv_44K_v2
AGGTTCAGCTCTCCCCGTTACCACTGGTCAGGCACTGTTCCACTGGTGAGCGATGGCGAT
GGTCACGGCTGACGCCTCCGCTGCCGCCGACGCCGCCACGAAGCAGCCAGACGTCGAAAA
GGATTACAGCTCCTACAACGGCGCCTCCACCGCGGGAGCGGGCGGCGGCGGCGGCGGCGG
CGTTGTGGAGTCGGTGGTGGCGCGGTGGAGGCGGGAGGACATGCTCGACAAGTGCCCCCT
CGCGCTGCACGCTGCCGCCGCCGCCTTCGCCTTCGTCGCGCTCGTGCTCGTCGCGTCCAA
CCAGCACGGCGACTGGATGCAGTTCGACCGCTACCAGGAGTACATGTACCTGCTCGCAAT
CGCGGCGCTGGCCTTCGCCTACTCGCTGGCGCAGGCGCTGCGGCACGCGCACCGGATGCG
CGGCGGCGCCGACCCCATCCCCGCGCCGTCCGCGAGGCTTTTCGATTTCATTGCTGATCA
GGTAGTCGCATACTTGCTGATGTCTGCTCTATCCGCGGCTATCCCCATCACGAACCGCAT
GAGAACAGCAGTGATCAACAACTTCACTGACGCGACCGCTGCAGCCATCAGCATGGCATT
CCTTGCATTTGTTGCCCTCGCCTTGTCAGCCACGGTTTCAGGCTACAAGCTCTCTAGGCA
AATGTACATGTGATGATGTGAATTCTCACTGTAAAAGAGTTAACTGCGAACATGAATCAT
TCATTTCAGAGAAAAAAAAAAAAAAAAA



Homology of Contig U35_22924 to Model Species (E-value threshold 1e-50)

Pseudo-peptide datasetHitHit lengthE-valueDescription
Rice v7None
Brachypodium v1_2Bradi1g65080.12153e-54
Arabidopsis v10None