barSeed - Barley Seed Development Database

Probe CUST_32325_PI390587928

Source Contig U35_12293

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_32325_PI390587928	Hv_44K_v2	TTACGTGTGACAAATCCTGCAAAGTCGGCATGTTAACTTTGGGGCGTTCATTGAGGAAAC	445	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_44984.1	3110	2e-24	204 - 263	100	60 / 60	minus	ABC08795 ABC21368
MLOC	MLOC_44984.2	2495	2e-24	103 - 162	100	60 / 60	minus	ABC08795 ABC21368
JLOC1	JLOC1_29191.5	2809	8e-25	2720 - 2779	100	60 / 60	plus
JLOC1	JLOC1_29191.4	2784	8e-25	2695 - 2754	100	60 / 60	plus
JLOC1	JLOC1_29191.3	2295	8e-25	2206 - 2265	100	60 / 60	plus
JLOC1	JLOC1_29191.2	2272	8e-25	2183 - 2242	100	60 / 60	plus
JLOC1	JLOC1_29191.1	2334	8e-25	2245 - 2304	100	60 / 60	plus
Harvest21	ABC21368	540	3e-25	36 - 95	100	60 / 60	minus	ABC21368
Harvest35	U35_12293	540	3e-25	446 - 505	100	60 / 60	plus

Contig Sequence (540 bp)

>U35_12293 540 Hv_44K_v2
TATGCGAGACGAAGGGATCCTTGCAGCTTGAGCTCATCTCCATCTCATCTCAGATTGTCT
GGATGATGAACCTACGGAAGCAGCCTGAATAGTGGGCAAAGCATGGAGAGGTGTGCATTG
AGCCACGGTGATGCCTATGCCAAACCGGTCCAGCCTTCCTGTAAATGAATAGCGGGCGAC
GGGGCAAGGTAGGCCCGGTGTGTAGTGTAGGGTCATATGGTCTGCCAGGAATAGCCGGCA
CATCATGTGCTTGCCAGGAATAGCTTCACCCCCAAGAAAACCAGTATATTTGCAAGACGA
TATATTATTAGGTCCACAGACCCCAGGGAACATCAGATTTTTAGTCATCCCAGCAAACGC
CCTCAAAGCCGTCGTCGTCGGATCACGATCAAACGGCTGGCAATTTCTTTGCGCGGCAGG
GCAACCTTTCTGTCATTTTTTTGATTTACGTGTGACAAATCCTGCAAAGTCGGCATGTTA
ACTTTGGGGCGTTCATTGAGGAAACGCTTCCAGAACGTTCGGCAAAAAAAAAAAAAAAAA

Homology of Contig U35_12293 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None