barSeed - Barley Seed Development Database

Probe CUST_32324_PI390587928

Source Contig U35_48222

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_32324_PI390587928	Hv_44K_v2	GTAGTAGCGTGTACCCTACAACTTCCCGCGGTATAAAGATTCATCATTCACCCCAAAAAA	11	GeneList: orange MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.295	0.877	1.550	1.577	0.848	0.963
Raw	40.879	201.853	298.396	465.930	90.948	112.909

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest35	U35_48222	261	3e-25	12 - 71	100	60 / 60	minus

Contig Sequence (261 bp)

>U35_48222 261 Hv_44K_v2
TTTTTTTTTTTTTTTTTGGGGTGAATGATGAATCTTTATACCGCGGGAAGTTGTAGGGTA
CACGCTACTACCAATACCACAGAAGAGCACCAAAACTGTACAGAAATACTTCCACGAGCG
TACGCACGCACGCATGAAACAAATACGGTTCGTCGTCTACCATCATGATGATCCGTTGGT
TGACGCCGAGAGAGAGCCTGACAAGTTGCACCGGCCTAGCAGCACGTATTATAAGCGCGG
CGACCGACGGCGTACGTACGG

Homology of Contig U35_48222 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None