- Probe CUST_3231_PI390587928
- Source Contig U35_22925
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_3231_PI390587928 | Hv_44K_v2 | TGGTTCAGACACTGCTATTTGTGACTGGGATAAAGACTCTGCTCCAGACACTATTTGGCA | 536 | GeneList: darkgrey MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.172 | 0.216 | 1.240 | 2.073 | 1.007 | 1.018 |
| Raw | 2.585 | 8.533 | 49.025 | 130.519 | 22.632 | 24.390 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | AK364444 | 2138 | 2e-24 | 544 - 603 | 100 | 60 / 60 | plus | ABC06138 |
| MLOC | MLOC_15987.1 | 1695 | 2e-24 | 843 - 902 | 100 | 60 / 60 | plus | ABC06138 |
| MLOC | MLOC_15987.2 | 1693 | 2e-24 | 843 - 902 | 100 | 60 / 60 | plus | ABC06138 |
| MLOC | MLOC_15987.4 | 1386 | 2e-24 | 511 - 570 | 100 | 60 / 60 | plus | ABC06138 |
| MLOC | MLOC_15987.3 | 1610 | 2e-24 | 843 - 902 | 100 | 60 / 60 | plus | ABC06138 |
| JLOC1 | JLOC1_10993.2 | 1161 | 8e-25 | 370 - 429 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_10993.1 | 1449 | 8e-25 | 658 - 717 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC17031 | 640 | 3e-25 | 537 - 596 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_22925 | 640 | 3e-25 | 537 - 596 | 100 | 60 / 60 | plus |
Contig Sequence (640 bp)
>U35_22925 640 Hv_44K_v2 GCTCGCCGAATTCCCATTGCGGCTACTGACATTTGTCCCCCCATCCGAGCGACCTCTCCT CTCTTGCATCCATCCACCCCTCTCGGCATTTCTCCGTGCTTCCGTTGGCCAGCAATCTGT TCCGCCTTGGGCTCCTGGTTGGTCTGGGAGCTTGGGAGGATTCCTTGATTTTCTTGATCT CTCTGCTCTCTACTCTTCTTCTTGCTCTTGATTTCCAGCTTAACATTTTTTTTTCTGAGG AGCATCTTTGCTGCCTTTCCCCTACCCCTTTCAATCAACCAAGCGGAAAGAATCTTCATC CTGAGCAGAGGAACAGTTCGATTGGGAAATGGCTGAAGTGAAACCGGAAGAGATGGTCCA CCATCCGCCCATGGATCAGCTGCAGGGGTTCGAATACTGCATAGACTCAAATCCTTCCTG GGGAGAGGCAATTGGTTTGGGCTTTCAGCATTACATACTGTCCCTAGGAACTGCTGTGAT GATCCCCACAATGTTGGTTCCTCTTATGGGTGGAAATGATCATGACAAGGCAAAAGTGGT TCAGACACTGCTATTTGTGACTGGGATAAAGACTCTGCTCCAGACACTATTTGGCACTCG TCTTCCCACTGTCATTGGCGGCTCATATGCATATGTTGTT
Homology of Contig U35_22925 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | LOC_Os09g15170.1 | 526 | 2e-63 | protein|nucleobase-ascorbate transporter, putative, expressed |
| Brachypodium v1_2 | Bradi4g27960.2 | 479 | 5e-61 | |
| Arabidopsis v10 | None |