barSeed - Barley Seed Development Database

Probe CUST_3227_PI390587928

Source Contig U35_22929

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_3227_PI390587928	Hv_44K_v2	ACGCAGAATATTTTCAAAAGCTGGGATAGACAACACATCAGTCCTGCAAGCTACTGATGA	524	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK357652	3152	2e-24	523 - 582	100	60 / 60	plus	ABC11778
MLOC	MLOC_51030.2	865	2e-24	129 - 188	100	60 / 60	plus	None
MLOC	MLOC_51030.1	1100	2e-24	376 - 435	100	60 / 60	plus	None
JLOC1	JLOC1_32562.1	1382	8e-25	374 - 433	100	60 / 60	plus
Harvest35	U35_22929	584	3e-25	525 - 584	100	60 / 60	plus

Contig Sequence (584 bp)

>U35_22929 584 Hv_44K_v2
ATCGCCGAACGCCGATCGTCCTCGTCCCACCACAAACAGCATTGCGCGCGCGCACCCACC
CGAATCACTCATTGGTACAGCTAAACCCTAAACCCTCCCGTGATGGCACTCTCCGCGGCG
TCCAGGCTCTCGCGCGCGGCGCGGGCCGCCGCCGTGGCCCGCCGCCTGGCAGCCGGCAGC
CGCGAGCCCCTCCCGCGAGCACTCGCGCCGCTAGCCGGGGAAACATCCTTCTCCACCGCC
ACCAAGGTCAGCAGGCCCTCGTGGTTCGCTCCTCCCATGGCCAGGCTCCCCGCGGGGGGC
GGCGGTGGCCTCCTGGTGCCGCCTCGCCGGCTTTTCCACTCCACGCCGCCGGCTCGGTAC
AGCGCCTCGTCCTCGTCCTCGTCACAGATAACTCCAGGGGACTTCACTGAGATGGCTTGG
GAGGGGGTTGCCGGTGCAGTTGATGCAGCGAGATTGTCTAAACAACAGATTGTGGAATCT
GAGCACCTGATGAAAGCCCTTTTGGAGCAGAAAGATGGGTTAGCACGCAGAATATTTTCA
AAAGCTGGGATAGACAACACATCAGTCCTGCAAGCTACTGATGA

Homology of Contig U35_22929 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None