- Probe CUST_32270_PI390587928
- Source Contig U35_50550
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_32270_PI390587928 | Hv_44K_v2 | CAAAAATTATGCCCAGGGGTTTGTAGGTGTAAACTCCCAAGTAGGGGAAAATGCCCTACA | 307 | GeneList: lightgreen MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.052 | 0.043 | 0.774 | 1.829 | 2.802 | 10.953 |
| Raw | 3.002 | 2.925 | 109.846 | 364.122 | 209.778 | 923.615 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| Harvest21 | ABC52753 | 416 | 3e-25 | 308 - 367 | 100 | 60 / 60 | minus | ABC52753 |
| Harvest35 | U35_50550 | 416 | 3e-25 | 308 - 367 | 100 | 60 / 60 | minus |
Contig Sequence (416 bp)
>U35_50550 416 Hv_44K_v2 TTTTTTTTTTTTTTTTTACTCTCGAGGGGACCCAATTTTTTTGAACCCAAAGGTCAAACC CCCCTTGCCCTGGGAAATCTCAAACCATGGATACCCATTTTTAGGCATTAAGGGATGGGA GGCCACCATCCCCGTTGCAAAAATTGACCCAACCTTCCCCCCATTTTTCCAAAAAAAGTT TTATTTTTTTGTCGCCAACAGTTGGGTTGACCATGTATCCACACATGGAACCCCTACCCC CCAAGTTGCAATACTTGACGGGGTTGGGTTCATTTGAGTTGGACACAAGGGCCAATTTGG GGAACCCTGTAGGGCATTTTCCCCTACTTGGGAGTTTACACCTACAAACCCCTGGGCATA ATTTTTGAACACCACGGACCCGGAAAAGGTTGTAACATTTTTTTCCTAGGGGGCTC
Homology of Contig U35_50550 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |