- Probe CUST_32266_PI390587928
- Source Contig U35_50553
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_32266_PI390587928 | Hv_44K_v2 | ATTGGTAAAGCAATGACATACTGTGATAAAGCCACAACTGTTTCTCCTACATATTCAAGG | 604 | GeneList: darkgrey MasterList: Starch_synthesis_Function_Probe_Module |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.176 | 0.251 | 1.381 | 2.584 | 0.959 | 1.105 |
| Raw | 2.898 | 9.526 | 55.108 | 162.001 | 21.769 | 27.430 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_57001.2 | 5366 | 2e-24 | 1173 - 1232 | 100 | 60 / 60 | minus | ABC10722 ABC44512 |
| MLOC | MLOC_57001.1 | 5510 | 2e-24 | 1229 - 1288 | 100 | 60 / 60 | minus | ABC10722 ABC44512 |
| JLOC1 | JLOC1_36896.2 | 5827 | 8e-25 | 4521 - 4580 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_36896.1 | 5515 | 8e-25 | 4209 - 4268 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC52756 | 667 | 3e-25 | 605 - 664 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC15300 | 1622 | 3e-25 | 994 - 1053 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_50553 | 667 | 3e-25 | 605 - 664 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_22079 | 1623 | 3e-25 | 994 - 1053 | 100 | 60 / 60 | plus |
Contig Sequence (667 bp)
>U35_50553 667 Hv_44K_v2 TCTGTATAGGAATAGAAGGCACTATGAATGAGGACCTGTTCGAGGATTTCTTGGTTAAAG AAAAGCAAAGGGAGCTTGAGAAACTTGCCATGGAAGAAGCTGAAAGGAGGACACAGACTG ACGAACAGCGGCGAAGGAAAGAAGCAAGGGCTGCAGATGAAGCTGTCAGGGCACAAGCGA AGGCCGAGATAGAGATCAAGATCTAGGGCATACTGTCGAGGTTATTCTTCCGAAGTACGA CTGTTTGAACCAAAGCAGTGTGAAGGATTTACATTTATATCAAAGTTTTTCTTGGAGTGG CACAGAAATAAAAGTATGGGTTGGACAAGTCGAAAACCTGACCGTTTACTTCCTGGAGCC TCAAAATGGGATGTTTGGCGTCGGATGTGTATATGGAAGGAATGATGACCGCAGATTTGG CTTCTTCTGTCATTCTGCTCTAGAGTTTATCCTCCAGAATGGACTTTCTCCACATATAAT ACATTGCCATGATTGGTCAAGTGCTCCGGTCGCCTGGCTATATAAGGAACACTATTCCCA ATCCAGAATGGCAAGTACTCGGGTTGTATTTACCATCCACAATCTTGAATTTGGAGCACA TTATATTGGTAAAGCAATGACATACTGTGATAAAGCCACAACTGTTTCTCCTACATATTC AAGGGAA
Homology of Contig U35_50553 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | LOC_Os04g53310.1 | 1217 | 1e-82 | protein|soluble starch synthase 3, chloroplast precursor, putative, expressed |
| Brachypodium v1_2 | Bradi3g15027.1 | 1718 | 2e-92 | |
| Arabidopsis v10 | AT1G11720.2 | 1094 | 4e-71 | | Symbols: SS3 | starch synthase 3 | chr1:3951597-3956840 FORWARD LENGTH=1094 |