- Probe CUST_32263_PI390587928
- Source Contig U35_50555
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_32263_PI390587928 | Hv_44K_v2 | TCAAGGTGGTTGGGTCATTGGTGATTCAGACACTTCCTATGTTATGCAATGTGCATGTCC | 557 | GeneList: black MasterList: Hordein_Function_Probe_Module |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.014 | 0.011 | 0.229 | 2.549 | 6.531 | 9.514 |
| Raw | 28.795 | 35.157 | 1024.516 | 15697.463 | 15217.727 | 24101.767 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | AK251750.1 | 1148 | 2e-24 | 876 - 935 | 100 | 60 / 60 | plus | ABC00209 ABC28950 ABC32362 |
| MLOC | MLOC_66711.1 | 2132 | 2e-23 | 1094 - 1151 | 100 | 58 / 58 | minus | ABC00209 ABC28950 ABC32362 |
| JLOC1 | JLOC1_43995.1 | 1222 | 1e-23 | 225 - 282 | 100 | 58 / 58 | minus | |
| Harvest21 | ABC52759 | 618 | 3e-25 | 558 - 617 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC00804 | 1131 | 3e-25 | 833 - 892 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC00521 | 1081 | 3e-25 | 833 - 892 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC00209 | 1153 | 3e-25 | 862 - 921 | 100 | 60 / 60 | plus | ABC00209 |
| Harvest21 | ABC00533 | 897 | 4e-24 | 608 - 665 | 100 | 58 / 58 | plus | |
| Harvest35 | U35_50555 | 618 | 3e-25 | 558 - 617 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_199 | 1131 | 3e-25 | 833 - 892 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_67 | 1153 | 3e-25 | 862 - 921 | 100 | 60 / 60 | plus |
Contig Sequence (618 bp)
>U35_50555 618 Hv_44K_v2 ATTTCCCCTGCAACCACAACAACCATTCCCCTGGCAACCACAACAACCATTTCCGCAGCC CCAACAACCAATTGCGCACCAACCACAACAACCATTCTCGTTCTCGCAGCAACCACAACA ACCATTCCCTCTGCAACCACAACAACCATATCCGCAACAGCAACCATTGGCACAACAACA ACCTTCTATAGAGGAACAACATCAATTGAACTTGTGCAAGGAGTTCCTCCTACAACAGTG CACCCTGGACGAGAAGGTACCATTACTCCAGTCAGTGATCTCGTTCCTCCGACCACATAT CTCGCAACAAAACAGTTGCCAATTGAAGCGACAACAATGTTGTCAACAACTAGCAAATAT CAATGAGCAATCCCGATGCCCAGCCATCCAAACCATTGTGCATGCCATCGTCATGCAACA ACAACAACAACAAGTACAACAACAGGTGGATCATGGTTTTGTCCAATCTCAACTGCAACA GTTGNGCCAGGGAATGCCCATCCAGCTTCAACAACAGCCGGGCCAGGCCTTTGTCCTACC TCAACAACAAGCCCAGTTCAAGGTGGTTGGGTCATTGGTGATTCAGACACTTCCTATGTT ATGCAATGTGCATGTCCC
Homology of Contig U35_50555 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |