barSeed - Barley Seed Development Database

Probe CUST_32260_PI390587928

Source Contig U35_50557

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_32260_PI390587928	Hv_44K_v2	TTGTCAAGGACGACCTCATGGAGCCGAGCCTGCACAAGTACGTGTCCGTGCGGGACATCC	224	GeneList: darkred MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.958	1.513	2.228	1.249	0.391	0.448
Raw	91.346	225.705	277.188	258.315	26.911	33.700

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_72635.1	1936	2e-24	563 - 622	100	60 / 60	minus	None
JLOC1	JLOC1_48317.1	1937	8e-25	1269 - 1328	100	60 / 60	plus
Harvest21	ABC52763	503	3e-25	225 - 284	100	60 / 60	plus
Harvest35	U35_50557	503	3e-25	225 - 284	100	60 / 60	plus

Contig Sequence (503 bp)

>U35_50557 503 Hv_44K_v2
CGCTAGCGACACGGCCGCGGCGGCGCCGGCGTTCTCGCTCCCGGCGTGCGTGTCCAAAGC
CTGCTCCATCCTTGAAGCGGTCGCGGACCTCAACTCCTCGCCGTCAGAGAACAGGAGCTT
CGAGCTGGACCGGTCGGCCGACGACAAGGGGTCGGCCAACGTGAGCTGCTACAGCGCCGG
GAAGGCGGCGGGAGCGGGCACGCACGTCGTCGAGTCCGAGGTCGTTGTCAAGGACGACCT
CATGGAGCCGAGCCTGCACAAGTACGTGTCCGTGCGGGACATCCGCGGCGAGGCCGAGCC
ACAGGAGTCCGCCGGGAGCAACAGCTTCGCCGGCAACCCGTGGACGTGCTCCTGGGAGCC
CAATTCCGTCGACTCCACCGACCGGACGTGGACGGCCTCGCAGTCCAACAGCGACGACGC
CGAGCAGCTCAGCGGTGGCACGGCCGGCACACTCGAACTGTCTTGGCACAGCAAGCAGGG
GTCCGGTGGCCGTGCACGGTTTG

Homology of Contig U35_50557 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os04g44640.1	1646	1e-68	protein\|ulp1 protease family, C-terminal catalytic domain containing protein, expressed
Brachypodium v1_2	None
Arabidopsis v10	None