- Probe CUST_32258_PI390587928
- Source Contig U35_50558
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_32258_PI390587928 | Hv_44K_v2 | AAAGTAAAATCGTCGAAACTTGAGGAGACAAAGAAAGCGCTGAAGAGCAGCAGACTCCAG | 491 | GeneList: darkred MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.776 | 1.069 | 1.375 | 0.979 | 0.531 | 0.975 |
| Raw | 12.283 | 23.949 | 28.822 | 30.958 | 4.810 | 11.464 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_3120.1 | 770 | 2e-24 | 151 - 210 | 100 | 60 / 60 | minus | None |
| JLOC1 | JLOC1_1875.1 | 868 | 8e-25 | 71 - 130 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC52764 | 553 | 3e-25 | 492 - 551 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_50558 | 553 | 3e-25 | 492 - 551 | 100 | 60 / 60 | plus |
Contig Sequence (553 bp)
>U35_50558 553 Hv_44K_v2 CCCTCTCTCCCCAAAGCTTCCGGCTCCCCAATCCCTCTCCTTCCATTCTTGGAGACCCAC CCTTTGGCCGTCCCCGTGACCGGAATCCCATGGAGATCGTTGTTTTCGCGCCCCAGCAGG CCAACCCGGCTCAAGCGGCGGTGGCACAGACCATGAACGCGGCGGCCATGGCCGCCATGC GGAAGCGCGGCGCCGCCAGCGCCATCTCGGCGAGGAGGAAGACGCTCTGCGACATCACCA ACCTGAGGCAGCCGCTGGCGGCCGCGGCCGACGAGGGGCAGCAGGACGGGTCGAGGTGCG TGGAGCGGCTGGTCAAGAAGAATTCAGATCTTGTGAAGCTCCTGGAGGAGAGAGAGGCTG AGCTGCAGAATCTGCGGCTGGCAAACTGGCAGCTTGCGCAGGCTAATTCCCAGATGTTAG CAGAGCTAAATCTTGGAAAAAATAGGCTGAAATTGCTACAACACGGGCTTACCTGCTCGA GAGCTGCCCTCAAAGTAAAATCGTCGAAACTTGAGGAGACAAAGAAAGCGCTGAAGAGCA GCAGACTCCAGCA
Homology of Contig U35_50558 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |