- Probe CUST_32252_PI390587928
- Source Contig U35_48243
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_32252_PI390587928 | Hv_44K_v2 | CGCCGCTAGTTCCGTGTAAACCTGAGAATGCTTATTAAAAAATCGGATGAAACTGTTTGG | 21 | GeneList: brown MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 4.845 | 5.410 | 1.611 | 0.733 | 0.156 | 0.114 |
| Raw | 2585.269 | 4431.010 | 1122.513 | 796.076 | 62.912 | 48.716 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_61024.1 | 2414 | 2e-24 | 148 - 207 | 100 | 60 / 60 | minus | None |
| JLOC1 | JLOC1_39839.1 | 2510 | 8e-25 | 364 - 423 | 100 | 60 / 60 | minus | |
| Harvest35 | U35_48243 | 283 | 3e-25 | 22 - 81 | 100 | 60 / 60 | minus |
Contig Sequence (283 bp)
>U35_48243 283 Hv_44K_v2 TTTTTTTTTTTTTTTTTAAAACCAAACAGTTTCATCCGATTTTTTAATAAGCATTCTCAG GTTTACACGGAACTAGCGGCGTCCGTGAGAGCAACCTGCCGGCGAAGCACGAGGCTGGTC GGCCGATCTTTTCCCATCTTTTTTTTGCGCTCAACAAAGCTTAGCTGATTACCCGGTTGC GACCCGATCCGGAACTCCAGGCACGAAACCAGAAAGGAAAAGTCACTCCACTCGCGCACG TAATCCTGAAATTGTTGGACCTGATTCAGCACGTCACAATAGC
Homology of Contig U35_48243 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |