barSeed - Barley Seed Development Database

Probe CUST_32237_PI390587928

Source Contig U35_24298

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_32237_PI390587928	Hv_44K_v2	GACGGCAGGAGGATCGCCTTCGTCGGGCTGCCGGGGCTGTACGTGGTGAACTCCGACGGC	259	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK357331	2423	2e-24	1266 - 1325	100	60 / 60	plus	ABC09696
MLOC	MLOC_34008.1	2878	2e-24	2552 - 2611	100	60 / 60	minus	ABC09684 ABC09696
JLOC1	JLOC1_21960.1	3149	8e-25	2552 - 2611	100	60 / 60	minus
Harvest21	ABC19530	378	3e-25	260 - 319	100	60 / 60	plus
Harvest35	U35_24298	379	3e-25	260 - 319	100	60 / 60	plus

Contig Sequence (379 bp)

>U35_24298 379 Hv_44K_v2
CGAGTACCGGCACATCGAGGTGATCGACCTGAGCGCCGGCGGCGGCATCGAGAACGCCGC
CTACTTCGAGGTGACCAGGCCCGTGGCGCCGCGCGCGCACCACTTCAACCCCTTCGTCTC
GCCGGACGGCGCGCGGGTCGGGTACCACAGGTGCCGGGGCACCGGGAACGGGGACTCGCC
GCTGCTGCTGGAGAGCCTCAAGAGCCCGGCGTCGGAGTCGCTGTTCAGGATCGACGGGTC
GTACCCTTCCTTCTCACCCGACGGCAGGAGGATCGCCTTCGTCGGGCTGCCGGGGCTGTA
CGTGGTGAACTCCGACGGCTCCGGCGGCCGCCGGAAGATCTTCTCGGGGAACGCATTCCC
CACGTCGTGGGACTGGAAG

Homology of Contig U35_24298 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g62370.1	689	8e-67	protein\|WD40-like Beta Propeller Repeat family protein, expressed
Brachypodium v1_2	Bradi1g02270.1	710	3e-69
Arabidopsis v10	None