barSeed - Barley Seed Development Database

Probe CUST_32232_PI390587928

Source Contig U35_23431

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_32232_PI390587928	Hv_44K_v2	GAGCCATTTTGCTGAACGTATGGCTGTGCGCAAGTCATGGATGATGTATACAAGAAAATC	836	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK355134	2342	2e-24	1314 - 1373	100	60 / 60	plus	ABC23070
MLOC	MLOC_16945.2	2100	3e-21	1016 - 1075	97	58 / 60	minus	ABC23070
MLOC	MLOC_16945.3	1444	3e-21	360 - 419	97	58 / 60	minus	None
MLOC	MLOC_16945.1	2063	3e-21	978 - 1037	97	58 / 60	minus	ABC23070
JLOC1	JLOC1_11698.1	2243	2e-21	1027 - 1086	97	58 / 60	plus
Harvest21	ABC19606	899	3e-25	837 - 896	100	60 / 60	plus
Harvest35	U35_23431	899	3e-25	837 - 896	100	60 / 60	plus

Contig Sequence (899 bp)

>U35_23431 899 Hv_44K_v2
CCGTCCCCGCCCCCGTCCTCCCCGATCTGCCCGCAATCCATCTCGCTCCACGCGGACAAG
CTCCCCGCCGACGGGGTCCGGACGGTGGAGCTGCCGTGCGGGCTCGCGGTGGGGTCGCAC
GTGACGGTGGTGGCGCGCCCGAGGCCCGCGCGGCCCGAGTACGACCCCAAGATCGCCCAG
CGCAAGGACGGCGGGAAGACGCCGCTCATGGTGTCGCAGTTCATGGTGGAGCTGGTGGGC
ACCAAGGTGGTGGACGGCGAGGCGCCGCCCAGGATCCTGCACTTCAACCCCAGGATCCGC
GGGGACTACAGCGGCAAGCCGGTGATTGAGATGAACAGCTGCTACCGGATGCAGTGGGCG
CGCTCGCACCGCTGCGAGGGCTTCGCCTCCCGCCCCGCCGAAGAAACTGTTGATGCTCAA
CTCAAGTGTGAGAAATGGATTCGGGATGATGACAACAAGTCGGAGGAGTCAAAGATGAAG
TGGTGGGTGAAACGTTTAATTGGCAGGTCAAAGGATGTGCACATCAGTTGGCCTTACCCA
TTCGCAGAAGGCAAGTTGTTTGTTTTGACCCTCACCGCTGGTTTGGAAGGTTACCATGTC
AATGTTGATGGGAGGCATGTCACTTCGTTTCCTTACCGCACTGGTTACACTCTTGAGGAT
GCAACTGGATTGTCTATCAATGGAGACATTGATATTGAGTCAATTTTTGCTAGTTCTCTG
CCCAGTTCACATCCTAGTTTCTCCCCAGAGAGATACCTTGAAATGTCGGAGCAATGGAGA
GCCCCACCTCTACCAACTGAGCCTGTCGAGCTGTTTATTGGCATTCTGTCAGCAGCGAGC
CATTTTGCTGAACGTATGGCTGTGCGCAAGTCATGGATGATGTATACAAGAAAATCATC

Homology of Contig U35_23431 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os07g09670.1	656	0.0	protein\|galactosyltransferase family protein, putative, expressed
Brachypodium v1_2	Bradi1g54650.1	654	0.0
Arabidopsis v10	AT1G74800.1	672	3e-119	Galactosyltransferase family protein \| chr1:28102221-28104993 REVERSE LENGTH=672