- Probe CUST_32227_PI390587928
- Source Contig U35_23436
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_32227_PI390587928 | Hv_44K_v2 | GAAATGTGGTTCTTGAATCCTGATCACCTCGATCTGCATGCTTCCATGTCCACGTTTTTT | 354 | GeneList: grey60 MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 3.916 | 3.344 | 1.122 | 0.715 | 0.394 | 0.347 |
| Raw | 67.249 | 98.635 | 27.623 | 29.545 | 3.717 | 3.002 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_67873.1 | 451 | 2e-24 | 92 - 151 | 100 | 60 / 60 | minus | None |
| MLOC | MLOC_67874.1 | 1353 | 2e-24 | 69 - 128 | 100 | 60 / 60 | minus | None |
| JLOC1 | JLOC1_44854.1 | 1390 | 8e-25 | 1178 - 1237 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_23436 | 473 | 3e-25 | 355 - 414 | 100 | 60 / 60 | plus |
Contig Sequence (473 bp)
>U35_23436 473 Hv_44K_v2 GTCCAGGACCCGTTCGCCACAGAGGGCTCGTCGTCGGCATCCGCCGCGGTCCAGGACGCG TTCGTCGGCGAGGTCTCGACGTCGGCCTCCGCCGCGTCGTCGGGGTCCAACTGGTCGGCG GTCGACAACGCGGGCGGGTTCTTCGTGGACTTCTGCGCGGCCGGGGCCGACCTCGCCGTC GCCGACCAGTTCCTCGGCGGCTTCTACTACCCTCTCGACCCGACCTTGTCAATAGTGTAG AAGATCTCGTGATTTGATCGATCAGACGTGCTTGTCCCAGGCGCTCGATCTCCATCAGTG AATTCAGATACAAGCTCTGGAAAAGGTGATCTTCGTACGTACGGTCGCAAACGGGAAATG TGGTTCTTGAATCCTGATCACCTCGATCTGCATGCTTCCATGTCCACGTTTTTTTCAAGT GTTTACAGTTCTTTGGGCAGAAACTTTGTGCCACTCAAAAAAAAAAAAAAAAA
Homology of Contig U35_23436 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |