- Probe CUST_32220_PI390587928
- Source Contig U35_35414
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_32220_PI390587928 | Hv_44K_v2 | AGACGAGAAGACCCATACATTGGGGAATGGCAAGCTGGAAGAACCTAACATTGCTGAAAA | 61 | GeneList: lightcyan MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.046 | 1.515 | 2.252 | 1.750 | 0.639 | 0.689 |
| Raw | 171.098 | 386.143 | 501.233 | 628.463 | 78.621 | 92.386 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | AK362898 | 3295 | 2e-24 | 2515 - 2574 | 100 | 60 / 60 | plus | None |
| MLOC | MLOC_60197.2 | 2939 | 2e-24 | 2121 - 2180 | 100 | 60 / 60 | plus | None |
| JLOC1 | JLOC1_39231.3 | 2987 | 8e-25 | 2123 - 2182 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_39231.2 | 2982 | 8e-25 | 2118 - 2177 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_35414 | 352 | 3e-25 | 62 - 121 | 100 | 60 / 60 | plus |
Contig Sequence (352 bp)
>U35_35414 352 Hv_44K_v2 GGCCATTACGGCCGGGTTACAAGACTGCAGATGCGGTAGGTACCCCAACTGCCGTACAAG AAGACGAGAAGACCCATACATTGGGGAATGGCAAGCTGGAAGAACCTAACATTGCTGAAA ACGCTCCTGCCGATGGAGAGACGGGCTCAAGGGTGACCGCTGAGCATAGTGATTCCTTAA CTAGGCTAAAACGAGCAGCAGCGACTGCTGTTTCAGCAGCTGCTGCGAAGGCTAAGCTCC TTGCTGCTCAGGAGGAAGATCAAATTCGACGACTAGCTGCACTGGTGGTTGAGAAGCTGC TGCCGAAGACGGAGGCGAAGATGTCGTTATTTGCAGATGTCGAGCATGTGGC
Homology of Contig U35_35414 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |