barSeed - Barley Seed Development Database

Probe CUST_32215_PI390587928

Source Contig U35_11461

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_32215_PI390587928	Hv_44K_v2	TCCTCTGGTCAGTGGATCAACATGTGCAGTGCACTGGAACAAGTGTTGTCCGGGCCCTCT	712	GeneList: white MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.045	2.185	1.990	1.763	0.612	0.610
Raw	35.150	118.612	88.391	134.375	14.562	16.003

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_5780.1	865	2e-24	260 - 319	100	60 / 60	minus	None
JLOC1	JLOC1_3742.1	449	8e-25	211 - 270	100	60 / 60	minus
Harvest35	U35_11461	837	3e-25	713 - 772	100	60 / 60	plus

Contig Sequence (837 bp)

>U35_11461 837 Hv_44K_v2
CACGCGTCCGACGTGGTGCTCCACCGCGACGTGAAGGCAAGCAACGTGCTCCTCGACGGC
GACATGGCGGGGCGGCTCGGCGACTTCGGGCTGGCCAAGCTGTACGAGCACGGCGCGAAC
CCGGCCACGACGCGGGTGGTGGGCACCCTGGGGTACCTGGCGCCGGAGCTGACGCGGACG
GGGAAGGCCACGACGGCGGCAGATGTGTTTGCGTTCGGGGCACTGGTGCTGGAGGTGGTC
GCCGGGCGGCGTCCCATCGAGCCGCGGGCGGCACCGGAGGAGCTCGTGCTGGTGGAGTGG
GCGTGGGAGCGGTACGCGGCGGGGGAGGTGGAGAAGGTGGTGGATGCGAGGCTGGGCGGG
TCGTTCGACGCCGAGGAGGCGGCCGTGGCGGTGAAACTGGGGCTGTGGTGCTCGCACCCG
GTGCCGGTGGCGAGGCCGACGATGAGGGAGGTGGCGAGGTACCTGGACAGCGGGGACGCC
ACGGAGGTGCCGCCGCCGCCGCCACCGCCGCCGCCACCGCCACCGCCGGTGTGCTCCGGC
GAGGTTGGGTACGACGACTTCGTGCACTCGTTCCCGTCGTCGTCGTTCGAGAGGGCGGCG
GCTGCCGGTGGAGGGGACCCGCTGTCGCAGACATCGGTGGCCACGTTCCCCTTCTCGCCG
CTGTCCATGCGGTCATCCCACGTCAGTGTATGACCCCCCACACCGTGAGCCATCCTCTGG
TCAGTGGATCAACATGTGCAGTGCACTGGAACAAGTGTTGTCCGGGCCCTCTCTTATAAT
TTGAATTTTTAAATGATATAAATCTTTTTAAAGTTTCACTAAAAAAAAAAAAAAAAA

Homology of Contig U35_11461 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os12g38610.1	687	8e-113	protein\|lectin-like receptor kinase, putative, expressed
Brachypodium v1_2	Bradi1g38317.1	694	9e-116
Arabidopsis v10	AT3G55550.1	684	3e-62	Concanavalin A-like lectin protein kinase family protein \| chr3:20600019-20602073 REVERSE LENGTH=684