barSeed - Barley Seed Development Database

Probe CUST_32214_PI390587928

Source Contig U35_11463

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_32214_PI390587928	Hv_44K_v2	GCTCTTCTATTGCAACCAAAGAAGATTCTACTACGTTGATATTCAGGACGGGGAGCGGTT	634	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_43983.1	1595	3e-22	611 - 669	98	59 / 60	minus	None
MLOC	MLOC_43983.2	1994	3e-22	497 - 555	98	59 / 60	minus	None
JLOC1	JLOC1_28465.1	3304	1e-22	1434 - 1492	98	59 / 60	plus
Harvest21	ABC25128	697	3e-25	635 - 694	100	60 / 60	plus
Harvest35	U35_11463	697	3e-25	635 - 694	100	60 / 60	plus

Contig Sequence (697 bp)

>U35_11463 697 Hv_44K_v2
GCAAAAGCATGGATCTCGTGTTGTCGAGTAGGTTTCAGATGTCAGACCCCTGCCACGGCT
TGGTGTGCGCCTATGATTTAAAAGGCGCTGTTGAGGTGTTGAATCCAACAACAAAGATAC
ATTTGAGACTGCCAGTTTCAGAACTCCAGTCACTAGCTTCAGAATATTTTCTTGGACCTG
TGCCTTCAACAAAAGAGTACAAGGTGCTCTGTATCCACCACCGGGTGCGGTTCTTGACGT
TTGAAGTATGCACTGTTGGCACACAGTCATGGAGGGCAGTGCGCGAATCCGCGGGCCTCC
TGAAGACAACAAAGGCGGTCATTGTTAATGATGTCATGCATTGGCTACTTCTTGATGAGA
TATCCTCCCATTTTACTCGGAACATCTTGTCATTCAACCTGACAGATGAGATGTTCTCAG
AAATTGCTGTCCCAGATGCTGTAAAAGACCGTGAATTGCACCTGTTTGAGGGGGGAGGGA
AGCTTCATTTGCTGGCAATGCCCGGTAACGGATCAGCATCTAAAACCTCAGAGATTTGGG
TGGCGAACTCGACCTGTGCAGTCTGGGACCACATGTGCAACGTCGCTTTTCTGCTTCCTT
TGGGCATGAGGCCGCTTTTCCTGCACAACAATAAGCTCTTCTATTGCAACCAAAGAAGAT
TCTACTACGTTGATATTCAGGACGGGGAGCGGTTCCT

Homology of Contig U35_11463 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g10600.1	437	1e-91	protein\|OsFBA1 - F-box and FBA domain containing protein, expressed
Brachypodium v1_2	Bradi3g07330.1	417	8e-114
Arabidopsis v10	None