barSeed - Barley Seed Development Database

Probe CUST_32211_PI390587928

Source Contig U35_11469

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_32211_PI390587928	Hv_44K_v2	TTTACCTTTCTAGCTAGCAGAGAGTGGTGAACTGCTGATCCCTGTTTGTTTTGGAATTGG	667	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.786	1.532	1.074	0.906	0.381	0.453
Raw	831.054	1145.408	694.193	925.003	138.385	175.705

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK367248	1520	3e-22	1364 - 1422	98	59 / 60	plus	None
MLOC	MLOC_71156.2	870	3e-22	94 - 152	98	59 / 60	minus	None
MLOC	MLOC_71156.1	1129	3e-22	98 - 156	98	59 / 60	minus	None
JLOC1	JLOC1_47257.1	1234	1e-22	982 - 1040	98	59 / 60	plus
Harvest21	ABC32425	743	3e-25	668 - 727	100	60 / 60	plus
Harvest35	U35_11469	743	3e-25	668 - 727	100	60 / 60	plus

Contig Sequence (743 bp)

>U35_11469 743 Hv_44K_v2
GGGCCGTCGAGCACTGCGTCCACGAGGCTAGGGGATTAGATGTCCTTCCACCACCATATC
AAGGTTCCGTGCTGGTGGGGATGAAGAAACAGCCAAACTACTTGAAGATATTATCTATCC
AGAAGAGATAACACACTGTGCAGCTGGTGTTAGATGGTTTAGATACTTGTGCCTCCGGTC
CCTCGCCAGCGATCCAATTGCACCTCCAGTTCCGCAGCCTAAACCCCACTGCGCCGAGCT
GCGAGAAGTAAGGACAGCTGATGATAATAAGACTTCTCAAGCGGTGCATGATGGATTGGC
AGATAAGCCGACAGAAGATATTAATAGCCATGATGAGACGGTTCAACAAGTGGAGGATGG
ACTGGCAAGGTGCCGCCTAGGCGAAAATGGGGACGCTGATGAAATGGCAATCATTGAGAA
GTTCCACAGCATTGTTAGAGAGCATTTCCGAGGACCACTGAAGCCCCCTTTCAATACGGA
AGCTAGGAAAGCGGCTGGATTTGGGCCTGCCTGGTATGAGCCCCTGGCGGTGAAGGAGGT
AGAGACACAAGCAACCGAGCAAAGTGTAGTGTAGACTGTGTCAGTGTTTGTGCTATTTTC
CTGTTACTGGTAGGGTAGAAGACACACAGTGGGTGCTACACCCTCAGTTCAATCTGGGTT
TTTTTGGTTTACCTTTCTAGCTAGCAGAGAGTGGTGAACTGCTGATCCCTGTTTGTTTTG
GAATTGGCAAGGCGAATGACACA

Homology of Contig U35_11469 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g24830.1	373	1e-68	protein\|uncharacterized protein HI0077, putative, expressed
Brachypodium v1_2	Bradi1g61771.1	351	1e-67
Arabidopsis v10	None