barSeed - Barley Seed Development Database

Probe CUST_32208_PI390587928

Source Contig U35_23442

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_32208_PI390587928	Hv_44K_v2	CAAACAGCTATGCAGAAGCAAGGTCTAGACATGCATGTGGCTGCACTAATTAATGACGCT	654	GeneList: saddlebrown MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.063	0.178	0.916	2.014	1.416	1.872
Raw	8.475	38.063	183.768	636.598	158.535	226.679

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_12451.3	1784	2e-24	1044 - 1103	100	60 / 60	minus	ABC49948
MLOC	MLOC_12451.1	1873	2e-24	991 - 1050	100	60 / 60	minus	ABC49948
MLOC	MLOC_12451.2	1907	2e-24	1025 - 1084	100	60 / 60	minus	ABC49948
JLOC1	JLOC1_8354.4	1922	8e-25	750 - 809	100	60 / 60	plus
JLOC1	JLOC1_8354.3	1825	8e-25	687 - 746	100	60 / 60	plus
JLOC1	JLOC1_8354.2	1196	8e-25	58 - 117	100	60 / 60	plus
JLOC1	JLOC1_8354.1	1230	8e-25	58 - 117	100	60 / 60	plus
Harvest21	ABC19658	749	3e-25	655 - 714	100	60 / 60	plus
Harvest35	U35_23442	749	3e-25	655 - 714	100	60 / 60	plus

Contig Sequence (749 bp)

>U35_23442 749 Hv_44K_v2
GCTTTCTTGGGCGGTCGAATATTTTGCCTGTCGTCGACCCCAACTCCTTTCCTCTCCCCG
CTATACTGTTTCAGTTCAGTCATTTCCCCTTGATCTGCCGGCCGGGCATCGGGAGCACCG
GTGGCAATGGCGGAGCAGCTGGTGGCTGACCTGCGGGAGAAGTGCGACACGCCCGTGTCG
CTGCTGCGCGACGTGGCGGCGGCCATGGCCGACGAGATGTGCGCCGGGCTGGAGAAGGAG
GGTGGGAGCAGGGTCAAGATGCTGCTCTCCTACGTCGACAAGCTCCCCACCGGGAGAGAG
GACGGTTTGTTCTATGGACTGGACCTAGGAGGGACAAACTTCCGAGTCTTGAAGGTGCAG
CTAGGTGGCAATGATAAGCATGTCATTAGCCGCGAGTCCAGAGAAGTAGCCATCCCACCA
CATTTGATGTCAGGGAGCTCCTCTGAATTGTTTGCTTTCATTGCTTCCGAATTAGCCAAG
TTTGTGACTGATGAAGAGAAGGGCACTAGCTTGTCAAACGGGAAGAAACTAGAATTAGGA
TTCACATTTTCTTTCCCAGTGAGGCAACGGTCTGTTGCATCAGGGACCCTTGTCAAGTGG
ACAAAGGCATTTTCTATAGAAGATGCTGTAGGTAAAGATGTTGTTGCGGAACTGCAAACA
GCTATGCAGAAGCAAGGTCTAGACATGCATGTGGCTGCACTAATTAATGACGCTGTTGGG
ACATTGGCTGGAGCCAGATACTACGATGA

Homology of Contig U35_23442 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g09460.1	459	3e-118	protein\|hexokinase, putative, expressed
Brachypodium v1_2	Bradi2g05670.1	460	9e-124
Arabidopsis v10	AT4G29130.1	496	4e-79	\| Symbols: ATHXK1, GIN2, HXK1 \| hexokinase 1 \| chr4:14352338-14354865 REVERSE LENGTH=496