barSeed - Barley Seed Development Database

Probe CUST_32201_PI390587928

Source Contig U35_23449

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_32201_PI390587928	Hv_44K_v2	TCTCATTAGCAGCACTTATTTTGCATCCATGTATACTGTATAGTTGTGTTCTTCTTTGCA	1064	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_55872.6	3518	2e-24	1023 - 1082	100	60 / 60	plus	ABC17093 ABC17276
MLOC	MLOC_55872.1	3361	2e-24	1296 - 1355	100	60 / 60	plus	ABC17093 ABC17276
JLOC1	JLOC1_36080.7	3470	8e-25	1082 - 1141	100	60 / 60	plus
JLOC1	JLOC1_36080.2	3347	8e-25	1023 - 1082	100	60 / 60	plus
Harvest35	U35_23449	1154	3e-25	1065 - 1124	100	60 / 60	plus

Contig Sequence (1154 bp)

>U35_23449 1154 Hv_44K_v2
GTGATTCCGAACGCCTCCATGCGCATCTCCTCCTCCCCATCTCCCCGCCTCCGCCTCCGC
CTCCTCCAGACCTGAACCATCCTCCCCATGGATTCTCGGAGGCGCCCCGCGAGTTTCCTG
ACGCAGGCCAACGCGCTCCTCCGCAAGAACCTCTGCCTCCAGAAACGGAACCTGAAGACA
AACATTGGCATCACCATCTTCCCTATCCTCATCTGCGTTTTGCTTCTCGTGCTCCAGAAC
ATCATCAACAATGAGCTCGACAAGCCCAAGTACAACTGCGGTTGTGCCTGTGTCGACACC
GACATGTACGGAACCTGCAAGAAGAGGGAGTGCGGCGTCCAATACTCGACATTGGAGCAG
GTCTGGAGCTGCGCAATTCCCAGCCCACCACGGTGGCCAGCCCTGATTCAGGTTCCCCAG
CCTCAGTTCCGGGCTGTCAGAACCGTCTCCCAGCCATTTGATGGTTTGCCCTATCCCTCA
TGCCGTGACTCTTTGTCTTGCCCCGCCACCGTCCTCATCACTGGAAAGGACCGAGGGTTT
GCTGAAAGTATTGCAGGAGGTCTGTTTCCTGTTTTCTCTCCCACTCTTAACGTGACAGAC
TATCTTGATGCTCTCTCCAGGATAATTGTTGGTTCAGACACCATTCCATGGTATACACAA
TTGGTAGAGCCTGCATTTTCTTCTTCGGATACTTTGTATCTGCTCCAGCCTCAGTGTGTG
CCCTACTTGTCTCAGACCATTTCATATAACGCCAGGGACATACCCCTCGAGCTAAATATA
CAGTGTGTTGAAGGTGTGTTGTTGTGGCGTGAGAGTACATCGATTATCAATGATGAATTA
TCAAAGGGTTATGTACAAAGCAGAGGAAAAACAAATGAGTTTATTGCAGGTTATCTTCCT
ATCTTCGTAGCACCAATTTTCTGCTTCTTCGCATTTGTAGCGGGTTTGCACAGCATTGAC
ATTTTGTTACCCAATTTCATAATGACTTATGATAAACTGGCCCTTGAATCCTGCTGTATT
ATTAATAATTGCTTGGGTCCATCTATCCAAATATGTGAATGAAATCTCATTAGCAGCACT
TATTTTGCATCCATGTATACTGTATAGTTGTGTTCTTCTTTGCANGGTATGACTTCTTGA
ACTCAACGGAATAT

Homology of Contig U35_23449 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os08g30770.1	958	7e-100	protein\|ABC transporter, ATP-binding protein, putative, expressed
Brachypodium v1_2	Bradi4g28617.1	908	7e-123
Arabidopsis v10	None