barSeed - Barley Seed Development Database

Probe CUST_32196_PI390587928

Source Contig U35_35425

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_32196_PI390587928	Hv_44K_v2	AGCATACTCTGCAAGCAATACAAGTTCAGAGAGCCCCGAGGAAATCAATGCGAAGATCAA	228	GeneList: white MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.063	1.438	1.507	1.338	0.482	0.526
Raw	104.580	223.504	196.797	286.561	35.306	41.386

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK376217	3678	7e-23	3204 - 3263	98	59 / 60	plus	ABC29344
MLOC	MLOC_12194.1	3338	7e-23	3138 - 3197	98	59 / 60	plus	None
MLOC	MLOC_12194.2	3467	7e-23	2974 - 3033	98	59 / 60	plus	ABC29344
JLOC1	JLOC1_8174.1	3362	4e-23	2869 - 2928	98	59 / 60	plus
Harvest35	U35_35425	396	3e-25	229 - 288	100	60 / 60	plus

Contig Sequence (396 bp)

>U35_35425 396 Hv_44K_v2
GGGGAGGGAGCACATACAGTTTCTGGAGCTACAAGGAATAGCGGGTGTAAGCCATCACAG
CCTCCTATTCTCAAAAACAGCAGTCTCGCCTTCGTTGGAGCCTGATGCTATGGAGAGCAA
GAACCCAACAATGCCGATGATGGCTAGGCAGTACAACAAGGCATCCTCGATGGACTACGT
CGCCAATGGCGCTGCCCATGCTTTCAAGCCAAAGGACTTCACTCCAAGAGCATACTCTGC
AAGCAATACAAGTTCAGAGAGCCCCGAGGAAATCAATGCGAAGATCAACCGGCTGTCGCA
AACCCTTTCGAACACGACGCTGGTGTCGAGGCTGCCTGACCGTGGGGAGAAGCTGAAGAA
GCAGATCCATGATCTGGACGAGAAGCTGATGGTGAT

Homology of Contig U35_35425 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value
Rice v7	None
Brachypodium v1_2	Bradi5g27610.1	1000	1e-61
Arabidopsis v10	None