barSeed - Barley Seed Development Database

Probe CUST_32191_PI390587928

Source Contig U35_47401

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_32191_PI390587928	Hv_44K_v2	TTTCTTGATGGATTTTTCAGACATGGATCATGGATATTTGAGGGCGGTCGTCAAACCAGC	142	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_67248.2	1747	2e-24	628 - 687	100	60 / 60	minus	ABC48423
MLOC	MLOC_67248.3	1920	2e-24	925 - 984	100	60 / 60	minus	None
MLOC	MLOC_67248.1	1871	2e-24	822 - 881	100	60 / 60	minus	ABC48423
JLOC1	JLOC1_44380.1	1868	8e-25	988 - 1047	100	60 / 60	plus
Harvest21	ABC48424	511	3e-25	143 - 202	100	60 / 60	plus
Harvest35	U35_47401	511	3e-25	143 - 202	100	60 / 60	plus

Contig Sequence (511 bp)

>U35_47401 511 Hv_44K_v2
CTCTGGTTGGACGGCAGCAGCTATGCGAGGTGATGACTCTCAACGGCCGCAGCGCTGGGC
GGTGGAGGGCAAGACCAGGACCTCCGGGCGCTGTCTTTTCCGATCACACGATGAAAAGCG
CGGTCATCGATGGGGTTGTGTATTTCTTGATGGATTTTTCAGACATGGATCATGGATATT
TGAGGGCGGTCGTCAAACCAGCCAGCATAGCTGCATTCAGCCTGGAGACAGAACAATGGA
TGCCGACGATCGACGGTCCGGAACAAGTCAGCAGCTTATATGACGAAGAAGATGTGCTTC
CTGTCTTCGAGAACCCCGGAGCTGTGGGGATTCTTTCGATAACCAATTTGAATGGGTACT
TAGTGGTGGTGCAGTTTCATCATAGTTTACATCAATCTATGGACCTATGGTTTCTGATGG
ATCATGAGAAAGGTCTCTGGGTTAAAAAGTACAGCATAGATTATTACCGTCGGGAGGATC
TTTTTAGTTATCCTTTGCTGGTGTTAGATGA

Homology of Contig U35_47401 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None