barSeed - Barley Seed Development Database

Probe CUST_32188_PI390587928

Source Contig U35_11474

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_32188_PI390587928	Hv_44K_v2	ATGTGGCGGCAAGAAAGGGCCCGTTCACGGGCTACAGGGACGCCAACTTCACCAACTACG	291	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK374189	2037	2e-24	337 - 396	100	60 / 60	plus	ABC10778 ABC32013
MLOC	MLOC_44072.1	2455	2e-24	2264 - 2323	100	60 / 60	minus	ABC10778 ABC32013 ABC43508
JLOC1	JLOC1_28529.1	2089	8e-25	1898 - 1957	100	60 / 60	minus
Harvest35	U35_32006	463	3e-25	195 - 254	100	60 / 60	plus
Harvest35	U35_11474	402	3e-25	292 - 351	100	60 / 60	plus

Contig Sequence (402 bp)

>U35_11474 402 Hv_44K_v2
ACTCCCCAAATCTCCGTCGTGGCCTCCAATGGCCTCTCCACCCCGCCCCGTCCTCACCGC
CCTGCTCCTAGCCCTCCTCCTGCTGCCCCCTGGCAATGCCTCCGGCGCCGCGTCGGTGAA
CCCGTTCACGGCGAAGGCGGCCTTCATCCGGTACTGGAACCGCAAGGTGCCCAACAACCG
CCGCCGACGCTGCGTCCTTCCCCTCGTCGCTCCCCGACATCCGCGCCCGCCTGCCCACGC
TCTGCTCCAAGGCTGCTCTGCTATGCCCGTCGTCCTCTGGCTCTGAATCTGATGTGGCGG
CAAGAAAGGGCCCGTTCACGGGCTACAGGGACGCCAACTTCACCAACTACGGCTCCGGCG
CCGGCGCCGGCACCGACGGGTTCAAGAACTACTCCCCCGACG

Homology of Contig U35_11474 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None