- Probe CUST_32185_PI390587928
- Source Contig U35_47404
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_32185_PI390587928 | Hv_44K_v2 | CAGTCATGAGGAACGTGCTTATATGTGTATAGTTTTTCTGGTCATATACTCCATGTGAAG | 21 | GeneList: saddlebrown MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.010 | 0.010 | 0.520 | 1.892 | 1.686 | 1.937 |
| Raw | 6.907 | 16.065 | 1035.262 | 5543.967 | 1820.317 | 2267.657 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_65928.1 | 1035 | 2e-24 | 849 - 908 | 100 | 60 / 60 | plus | ABC48430 |
| JLOC1 | JLOC1_43418.1 | 1035 | 8e-25 | 849 - 908 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC48430 | 427 | 3e-25 | 22 - 81 | 100 | 60 / 60 | minus | ABC48430 |
| Harvest35 | U35_47404 | 427 | 3e-25 | 22 - 81 | 100 | 60 / 60 | minus |
Contig Sequence (427 bp)
>U35_47404 427 Hv_44K_v2 TTTTTTTTTTTTTTTTTATATCTTCACATGGAGTATATGACCAGAAAAACTATACACATA TAAGCACGTTCCTCATGACTGACCACCGCCACTTGGCGACCATGGACGACATGCAAATTA CAAATATGTAGTAATAATAAGAATCATGCACATGCAGACACAACATGCGCGCATGCACGC GCTCCCGCAGTGACCGTCGGAGATTTATTCATTGCCATACCTCGGATATCTAGCGCATAA AGTCCATGATGAGATCTCGGTGCGGGTAGTCGTTCAACAGGGAGTCTTCGTCGTCCGCAT AGTGGACGGATTTAGCGTCCTCCACCTCCTCGTACGCCGGCAAGGGCACCCTCATGGTCG GCATGGTGGTCGCANCTATGGTGACGGCGGCCGCGGTTGCGGTTGGGGAGGAGAAAACAT CGTCCCC
Homology of Contig U35_47404 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |