- Probe CUST_32181_PI390587928
- Source Contig U35_11478
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_32181_PI390587928 | Hv_44K_v2 | GTTTAGATAATGTGCTTGGTTCATGCGAGCACAGTAATATACGCCATCCGTCTGAAAAAA | 11 | GeneList: turquoise MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.374 | 1.474 | 1.087 | 0.811 | 0.356 | 0.354 |
| Raw | 116.864 | 187.107 | 124.936 | 145.949 | 22.572 | 24.684 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| JLOC1 | JLOC1_12268.2 | 3883 | 2e-21 | 3769 - 3825 | 98 | 56 / 57 | plus | |
| JLOC1 | JLOC1_12268.1 | 3400 | 2e-21 | 3286 - 3342 | 98 | 56 / 57 | plus | |
| Harvest21 | ABC47523 | 499 | 3e-25 | 12 - 71 | 100 | 60 / 60 | minus | ABC47523 |
| Harvest35 | U35_11478 | 515 | 3e-25 | 12 - 71 | 100 | 60 / 60 | minus |
Contig Sequence (515 bp)
>U35_11478 515 Hv_44K_v2 TTTTTTTTTTTTTTTTTCAGACGGATGGCGTATATTACTGTGCTCGCATGAACCAAGCAC ATTATCTAAACTGTGCTAGCTACAACACAGGACAAAATAAACAGGAAATGGCTCGAACCA TATCTAGCAGGACTCAAACTCAACCATCTCAACAGAACAAAACAAAACAAAACTATACAA GCATCTAACCAGCATATATTACATTGGCACATCTATACGGGCATGCTCACATGCTCAGTA ATCCAGCATCAAGTCGGTACAAAACCACACTAGTCAAGGAACAGATCCGGTACAGCAAAC ACACAGGGCCAGAGTTTCAGACCGTCTTCTCGAGAAAATGAAGCACAACCGCCCTGAGCC GCTCCACAAAATTGCGGCACAGACATATACATCCCACGACAACCTTCTGCTGCACAAGAT GTCACCTGCGTAGGAACAACCTCCAGAGTTCATACTCCTACATCCATCTTGCTGACAACA AGGCAGGACAAGCAGATTCAATGACGTTCTTTTGA
Homology of Contig U35_11478 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |