barSeed - Barley Seed Development Database

Probe CUST_3217_PI390587928

Source Contig U35_10951

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_3217_PI390587928	Hv_44K_v2	GCACTGTATAGGTGATATCAAGTGATTACTGTATTTTTCTCTTTGCTGTGGCAGTTCTTT	257	GeneList: darkgreen MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.791	2.158	2.869	2.074	0.275	0.227
Raw	55.401	240.418	271.969	308.027	14.274	13.249

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_58693.1	1363	7e-23	180 - 239	98	59 / 60	minus	ABC23446
MLOC	MLOC_58693.3	1649	7e-23	109 - 168	98	59 / 60	minus	ABC23446
MLOC	MLOC_58693.2	1783	7e-23	180 - 239	98	59 / 60	minus	ABC23446
JLOC1	JLOC1_38150.1	2480	4e-23	275 - 334	98	59 / 60	minus
JLOC1	JLOC1_38149.1	1876	4e-23	1543 - 1602	98	59 / 60	plus
Harvest21	ABC23446	387	3e-25	71 - 130	100	60 / 60	minus	ABC23446
Harvest35	U35_10951	387	3e-25	258 - 317	100	60 / 60	plus

Contig Sequence (387 bp)

>U35_10951 387 Hv_44K_v2
GTGGACCTGCTGCTCGACATGGGCGCCGACGTCCACGCCCGGACCAAGCGGGGCGCCACG
CCGCTCCACATGGCCGACACCATGGGGTACGACGACATCTCGCAGCTGCTGCGCGGCCGG
GGCGCCGACGAGGCGGCGGCGGCAGCTGACGCGCAGCTGTGCATTGCATCGTCGTCTTCC
TCGTCGATATCCTGCGCATAAGACCTTGTTTGCGTCTTCGATTCAGAGTATTTGATTGTA
AAGACCATGTTAATACTGCACTGTATAGGTGATATCAAGTGATTACTGTATTTTTCTCTT
TGCTGTGGCAGTTCTTTNNNGAACGGAATTGCTAATTCTCATCTAGATGAGAATTAACAA
AGTTTCATCCAAAAAAAAAAAAAAAAA

Homology of Contig U35_10951 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None