barSeed - Barley Seed Development Database

Probe CUST_32179_PI390587928

Source Contig U35_11479

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_32179_PI390587928	Hv_44K_v2	CTGTTCGTTGGTTGGTTCCTGTTTTAGATAGCTTCTGCGGATGACGCCGAAACCTTTTTT	456	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_68967.2	1520	2e-24	168 - 227	100	60 / 60	minus	None
MLOC	MLOC_68967.1	1357	2e-24	178 - 237	100	60 / 60	minus	None
MLOC	AK363800	1506	2e-23	1313 - 1370	100	58 / 58	plus	None
JLOC1	JLOC1_45677.1	1317	8e-25	1080 - 1139	100	60 / 60	plus
Harvest21	ABC25584	547	3e-25	457 - 516	100	60 / 60	plus
Harvest35	U35_11479	549	3e-25	457 - 516	100	60 / 60	plus

Contig Sequence (549 bp)

>U35_11479 549 Hv_44K_v2
GCGGTCGACTGCACCAACGACCGTGCCTGCAACAACTGCCGCCAGCCGGGTCACATTGCA
CGCGAGTGCAAGAACGACCCCGTCTGCAACCTTTGCAACGTGTCAGGCCACCTGGCCCGC
AGCTGCCCTAAGACGACGACCCTAGCCTCAGAGATCCACGGCGGGCCCTTCCGCGACATC
TCGTGCCGCATATGTGGCCAGCCGGGCCACATCAGTCGCAACTGCATGGTGACCGTCATC
TGCGACACCTGCGGTGGGAGGGGCCATATGTCGTACGAGTGCCCCTCGGCCAGGGTCTTT
GACCGCGGCGTCCGCCGGTTCTGATGACGCCATGGATCCAGGACGGGCCCTGGCACCTGA
AATGACCGTGGCGTCTGCCGGTTCTGATGGATTCGGGGGTTGACCCCGGCGCCTGAAGCG
CCCCACCCTGATGCGCCTGTTCCGATGGATTCGGTTCTGTTCGTTGGTTGGTTCCTGTTT
TAGATAGCTTCTGCGGATGACGCCGAAACCTTTTTTTCGCTTGGTCGGTGTATGCCCTTG
TTGCTCCCT

Homology of Contig U35_11479 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g60600.2	243	1e-59	protein\|zinc knuckle domain containing protein, expressed
Brachypodium v1_2	Bradi1g03737.1	280	3e-64
Arabidopsis v10	None