barSeed - Barley Seed Development Database

Probe CUST_32176_PI390587928

Source Contig U35_23451

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_32176_PI390587928	Hv_44K_v2	GGGAGAGGGACTTGTCATCAACATGGGCCTGTAGGTCCACATAATTGTGTATATAAAAAA	560	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.258	1.468	1.130	0.743	0.414	0.572
Raw	1164.577	2116.443	1447.967	1499.557	286.245	439.403

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest21	ABC20596	623	3e-25	561 - 620	100	60 / 60	plus	ABC20596
Harvest35	U35_23451	623	3e-25	561 - 620	100	60 / 60	plus

Contig Sequence (623 bp)

>U35_23451 623 Hv_44K_v2
GGCATTGCTCACCATTATTGAAGTCTTCATCCATGACCCTCTTTATAAATGGGCCCTTTC
GCCACTGAAAGCTTTACAGCGTCAGAAGGAAACTGAATACAATGATTCGTGCCTGGACGA
CTCCCAAGAGGCGTGCGAGGGCAACAAGGACGCAGCCCGTGCCATACTCCGTGTCAAGCA
GAAGCTGGATGGGTACGAGGATGGCGAGATGAGGAGCGTAGAGGGGCAGGTCCAGCAGCT
CATACAGGACGCGGTAGACGCTGATCGCTTGTGCCAGATGTTCCCAGGGTGGGCGCCTTG
GCTGTAAAGCGCCGCCCATAAGAAAGAAGATAGATGGAGAATTTGGGCCTGCAGTGCAGT
GCAGCAAAGGCGGTTTTGTGACTGCTAGTGCTAGAGGAGGTTTTACTTTTGGTGCCTGGC
GCCTGTTTTTGTGCGCAAAGGCTGTAAAGCGCCCGTGAGGAACATAGATGGAGATTCCGA
ACCCGCCGTAAAAGCGATTTTGTGACCGCTAGAGAAGCTTTTGCTTTCGGCGCCTCTCGT
GCTTGTTCTTGTGCCAAGGCGGGAGAGGGACTTGTCATCAACATGGGCCTGTAGGTCCAC
ATAATTGTGTATATAAAAAAAAC

Homology of Contig U35_23451 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g01689.3	2829	1e-55	protein\|phosphatidylinositol 3- and 4-kinase family protein, expressed
Brachypodium v1_2	Bradi2g00627.1	2845	2e-56
Arabidopsis v10	None