barSeed - Barley Seed Development Database

Probe CUST_32173_PI390587928

Source Contig U35_23454

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_32173_PI390587928	Hv_44K_v2	GGCTTGGAGATGAACAGAGCTTCAGACATAGCGAGAATTAATGAAACATTACAGATAAAA	1182	GeneList: yellow MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.958	2.704	1.243	0.640	0.192	0.240
Raw	540.113	779.623	314.738	264.780	26.638	37.658

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_17300.2	2758	7e-23	24 - 80	100	57 / 57	minus	None
MLOC	MLOC_17300.1	2940	7e-23	32 - 88	100	57 / 57	minus	None
MLOC	MLOC_17300.3	3239	7e-23	16 - 72	100	57 / 57	minus	None
MLOC	MLOC_17300.4	2729	3e-21	1 - 54	100	54 / 54	minus	None
JLOC1	JLOC1_11944.6	2892	4e-23	2807 - 2863	100	57 / 57	plus
JLOC1	JLOC1_11944.5	2737	4e-23	2652 - 2708	100	57 / 57	plus
JLOC1	JLOC1_11944.4	2623	4e-23	2538 - 2594	100	57 / 57	plus
JLOC1	JLOC1_11944.3	2186	4e-23	2101 - 2157	100	57 / 57	plus
JLOC1	JLOC1_11944.2	1961	4e-23	1876 - 1932	100	57 / 57	plus
JLOC1	JLOC1_11944.1	1719	4e-23	1634 - 1690	100	57 / 57	plus
Harvest21	ABC29317	319	3e-25	245 - 304	100	60 / 60	plus
Harvest35	U35_23454	1255	3e-25	1183 - 1242	100	60 / 60	plus

Contig Sequence (1255 bp)

>U35_23454 1255 Hv_44K_v2
CAGCTCGCAACTTTGAAACATCATGGATCCTCAGCATGTCAACTGGCGAAAAACAGAATA
TTTTAAGAGGTAGAGCTGAAGCAATGGAGTTGTGTCAGCAAATGATTGATGAGAGGCATG
CCCTCCTTAAAGATATACACATCAATGGGTCATCAGGTGATAAAGACCATTCTAATCTGC
TGGAGAAGATCCCTTGCAATGGACTTGTATCGTCAATTTCAAGATTCCGGAAATGCATTC
TCTTCTGTGATACAGATGGTCAAAGGGTTCAGAAGCATGACTTGGATACCAAAGAAACCT
CGATTATTCATTTTACAAATGTTGGGGTTCTTGGGTTACCATATTGGTTTGTTTGCCGTC
TCGAGAAAGTATCTACCTGGGGACATTCAGCTGGACAATTTCAAGAGCATAGCCGTAAAG
TAAATGTGCTCCCTGGAAGATGCAACATCAAGATCTCTGTAGACATCCCGGTTGATACTG
AGCTTGCCACACCTTTGGTTGAGAGCTGTATTTGGCGCCAAGTAAGGGGATCTGGTGCTG
AGATTTCTGAATCTGATGCACAAGAAACAACGTCTGAGAAGGTTGGTATAGCACAGCAAT
GGTACGATGAAATAGACAACCTAGCCTTTTCTGAAGCTGCTGAGGAACCTGCTGTGCATA
AAGGTGATGATAAACCCGCAGATGAAAGTCACCAAGACCAGAAATGCGTGCATTTCACCT
GCGCAGTTAACGTCAGNCCTGGGACATGCGAGCTGGTGGCCTCTGCTGCGTTGTACCTGA
AGGTTGACCGAATGAAAGCGGACCACAAGGACCAGAAAACAGTGATCAAGAGGATCCTCC
AGTGCCAGGGGCATGAGGAGCACGCAGGCGTCGAGCTCCTGACAGAGAACCACAGAGACG
CGAGGGATCTGGTCATCATGAAGCCGGTCCATATAAGGCTGAGGATGGAGTGCGCCGATC
ACCCTGCTGGAACCACCAACAAGGAGACCATCAGCACCGAGTCTAGTCTTGAGATCAGTA
TATCTTTAGAGTAGCCATTTCTATTCCACTGAGGACACGATAGTGCACGTTACGTGCTAG
GGTAGAATGACTTGTTCGTAAGAGACCGGGATCTTGTCACTAGACAAAGATGTTCAGCCC
ATTTGAGGTAGTCTGGCAGTTGCCCTGTCTACAGAAACACATGGCTTGGAGATGAACAGA
GCTTCAGACATAGCGAGAATTAATGAAACATTACAGATAAAAAAAAAAAAAAAAG

Homology of Contig U35_23454 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os08g04120.1	598	7e-164	protein\|expressed protein
Brachypodium v1_2	Bradi3g14412.1	734	6e-139
Arabidopsis v10	AT3G07060.1	774	1e-57	\| Symbols: emb1974 \| NHL domain-containing protein \| chr3:2232760-2236913 FORWARD LENGTH=774