barSeed - Barley Seed Development Database

Probe CUST_32172_PI390587928

Source Contig U35_23455

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_32172_PI390587928	Hv_44K_v2	GAATGCTACCAAATCCACTATTCGGTACGCTTGGCTGGAGCATAAGGCAGTTAATGATGA	842	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.245	1.226	1.101	0.772	0.447	0.445
Raw	332.537	441.295	399.649	388.870	89.287	96.697

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK363628	4446	2e-24	2660 - 2719	100	60 / 60	plus	ABC12223
MLOC	MLOC_15442.4	3694	2e-24	1622 - 1681	100	60 / 60	minus	ABC12223
MLOC	MLOC_15442.1	3634	2e-24	1464 - 1523	100	60 / 60	minus	ABC12223
MLOC	MLOC_15442.3	4008	2e-24	1809 - 1868	100	60 / 60	minus	ABC12223
MLOC	MLOC_15442.2	2785	2e-24	1813 - 1872	100	60 / 60	minus	ABC12223
JLOC1	JLOC1_10595.1	4069	8e-25	1900 - 1959	100	60 / 60	minus
Harvest21	ABC25963	902	3e-25	843 - 902	100	60 / 60	plus
Harvest35	U35_23455	902	3e-25	843 - 902	100	60 / 60	plus

Contig Sequence (902 bp)

>U35_23455 902 Hv_44K_v2
GGTGCAAATGACAAGGCTGGTAGAAGAATGGCATCTGACCCTGCTGATCCAGATCTTGAA
TTTTCAACAGGGAATATGTCTAAATCTTCTGCACCAAGTGCAAATGACAAGGCGGGTAGA
AGAATGGCATCTGACCCTGCTGATCCAGATGTTGAATTTTCAACAGGGAATATGTCTAAA
TCTTCTGCACCAAGTGCAAATGACAAGGCAGGTAGAAGAATGGCATCTGACCCTGCTGAT
TCAGATGTTGGATTTTCAAGAGGGAATATGTCTAAAACTTCTGCAACAACTGCAGATGAC
AAGGCAGGTAGAAGAATGGCATCTGACCCTGGTGATCCAGATGTTGTTTATAGTAAAAAC
CCATGCAGTAGGGTAGTAGATACATCAGCAGAGCCAGGTGCTACTGGCAGCCCTAGTCCC
CGGAGATCAGCTAGGAGAAAGGCAAACAATGATGACAGTACCCAGGTTCCCCCTAGCAAA
AAGAGGCGAACACTAAAAGATTGGTTTTCAAATGCTGACACTAGTTGTAAGAAAATGTTT
GATGATAATGTTGCTCGTGCTGATGTAAAAACTGGTGAAGCTCATGTCCCTAGCAAAGCA
CACAACAAAGAGAAAGGAAGCACTGCCAAAGAAGGGAACCAGGAAAGCGTTAAGAAAGAA
TTTACATGTGATGCAGCTGCTGGGAAGAATCCTTGCGATTCTGTGGAATTAACCTACCCT
GACCCAGAATTTTTTGACTTTGATAAAGGCAGGGATGTGAATTTGTTTGCAGTTGATCAG
GTTTGGGCAGTTTATGATGACCGTGATGGCATGCCACGATATTATGCTCGAATAAAGCAT
GTGAATGCTACCAAATCCACTATTCGGTACGCTTGGCTGGAGCATAAGGCAGTTAATGAT
GA

Homology of Contig U35_23455 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g27740.2	1009	6e-58	protein\|dnaJ domain containing protein, expressed
Brachypodium v1_2	Bradi1g76707.1	977	9e-89
Arabidopsis v10	None