barSeed - Barley Seed Development Database

Probe CUST_32168_PI390587928

Source Contig U35_23459

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_32168_PI390587928	Hv_44K_v2	CGTGGTGTTACTAAATTATATACTCCTACTACTAGTGTAGCGATTGTTACGCGTAAAAAA	559	GeneList: paleturquoise MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	14.627	8.403	1.445	0.735	0.329	0.232
Raw	389.943	330.154	56.602	48.019	6.007	4.653

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK252122.1	2039	3e-22	1961 - 2016	100	56 / 56	plus	ABC49907
MLOC	MLOC_80672.2	1343	3e-22	50 - 105	100	56 / 56	minus	ABC49907
MLOC	MLOC_80672.1	2060	3e-22	53 - 108	100	56 / 56	minus	ABC49907
MLOC	MLOC_80672.3	2310	3e-21	1 - 54	100	54 / 54	minus	ABC49907
JLOC1	JLOC1_53715.1	2406	1e-22	2089 - 2144	100	56 / 56	plus
Harvest35	U35_23459	630	3e-25	560 - 619	100	60 / 60	plus

Contig Sequence (630 bp)

>U35_23459 630 Hv_44K_v2
CTTCTCCAAGCCCAACATCCCNTACATGAGGCCCGTGCTCGACAAGCTGNCCACGCTCAA
CCTGCCCATCTGGTTCACCGAGATCGACATCAACAACAAGTTCGACGCGCAGACGCAGGC
CGTGTACCTGGAGCAGGTGCTGCGGGAGGCGTACGCGCACCCGGCGGTCAGCGGCGTCAT
GCTCTGGACGGCGCTGCACGAGAACGGGTGCTACCAGATGTGCCTCACGGACTGGAACCT
CAAGAACCTGCCCGTCGGGGACGTCGTCGACCGCCTGCTGCAGGAGTGGCAGACGGGGCA
GGCCGCCGGCCCGACGGACGCGCACGGCGCCTACAGCTTCAGCGGCTACCTCGGCGAGTA
CGTCGTCACCGTCAACGCCGGCAACACCTCCAAGCAGGCCACCTTCTCGCTGTCTCCAGG
GGACGAGACCAGGCACATCACCATTCAGATATGACACTAGTACTAGTGTTCCGATCCATA
TGTGTGGCACGCTGTTGCTGCCCGCACTTGTTGCCTCGGGCTTCTACCTCCGCTCACACA
TATCGTCGCATGTGCGATGCGTGGTGTTACTAAATTATATACTCCTACTACTAGTGTAGC
GATTGTTACGCGTAAAAAAAAAAAAAAAAA

Homology of Contig U35_23459 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g14010.3	471	8e-89	protein\|glycosyl hydrolase family 10 protein, putative, expressed
Brachypodium v1_2	Bradi1g68310.1	564	8e-94
Arabidopsis v10	AT4G38650.1	562	9e-58	Glycosyl hydrolase family 10 protein \| chr4:18063377-18065769 FORWARD LENGTH=562