barSeed - Barley Seed Development Database

Probe CUST_32164_PI390587928

Source Contig U35_35434

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_32164_PI390587928	Hv_44K_v2	CCCAAAGGCTCGAAAATTTTGTCAGGACTTGTTGATAGAGAGGATTACCACAAATTTTTT	278	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_12494.1	1925	2e-24	1765 - 1824	100	60 / 60	plus	None
MLOC	MLOC_12494.2	2290	2e-24	2130 - 2189	100	60 / 60	plus	None
MLOC	AK367106	2565	7e-23	2438 - 2497	98	59 / 60	plus	None
JLOC1	JLOC1_8380.2	2343	8e-25	2129 - 2188	100	60 / 60	plus
JLOC1	JLOC1_8380.1	1978	8e-25	1764 - 1823	100	60 / 60	plus
Harvest35	U35_35434	401	3e-25	279 - 338	100	60 / 60	plus
Harvest35	U35_21782	1028	1e-23	884 - 943	98	59 / 60	plus

Contig Sequence (401 bp)

>U35_35434 401 Hv_44K_v2
GGGCGCCGCCTCCCGTGGTGCGCATGCAACAACCTCGAAAGATGCTCCCAGACAGTGCAC
CAAAGGAACCTGGAAGAGCATCAAAGGAGCCCGTGAGAGCTTCCAAGAAGCCAGCGGGGA
AGCGCTCGAGGAAATCAGGCTCGAAACGGGCCCATCGAACGAAAACCGCTGGCGGGAAGG
AACCCATTCGACTGTAAATCTCTCCTGGCGAAATTTTGCTCCCATATAATTGAAGATCAA
CCCGGTTCGGTTTATTTAGCTTGTATTCATGTTCCACTCCCAAAGGCTCGAAAATTTTGT
CAGGACTTGTTGATAGAGAGGATTACCACAAATTTTTTTGGGGTGTAAATAAACATTTTG
GAATAAAAGGTGGGTTTAAGTTGCAAAAAAAAAAAAAAAAA

Homology of Contig U35_35434 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None