barSeed - Barley Seed Development Database

Probe CUST_32163_PI390587928

Source Contig U35_35435

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_32163_PI390587928	Hv_44K_v2	CCTCGTTCATGATGGTGCAGTTGAGATATGTATCTATGTGAGAATAGTGCATTATGTGAT	212	GeneList: white MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.053	1.576	1.738	1.448	0.514	0.418
Raw	225.698	540.393	504.630	664.906	83.387	72.592

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK364552	2254	2e-24	2179 - 2238	100	60 / 60	plus	ABC30225
MLOC	MLOC_15175.1	1823	2e-24	1567 - 1626	100	60 / 60	plus	ABC30225
JLOC1	JLOC1_10394.1	1715	8e-25	1556 - 1615	100	60 / 60	plus
Harvest35	U35_35435	308	3e-25	213 - 272	100	60 / 60	plus

Contig Sequence (308 bp)

>U35_35435 308 Hv_44K_v2
GGTTGTTGTTTTACTTGTCATCAGCAATTTCCGAAGTAAATCACTATGGCATTCAGAAAA
GGTTGTTCCAGGTATCATGGTGATATATTTTTAATTCCTTTTGCTCGGAAAGTCCAGTTG
TAGAATAACTAGTGCTTACGCCTGTGAGAAATTGCTCCTTATTTTCTCTACTTGGTGTTG
ATAGCACAATCAGTATTGATTGTATTGCAGAACCTCGTTCATGATGGTGCAGTTGAGATA
TGTATCTATGTGAGAATAGTGCATTATGTGATTATTATTTTTCTTCTGCNNAAAAAAAAA
AAAAAAAA

Homology of Contig U35_35435 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None