barSeed - Barley Seed Development Database

Probe CUST_32153_PI390587928

Source Contig U35_47412

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_32153_PI390587928	Hv_44K_v2	TCTCTTTCCGGATCTCGAAGGTATTGTGCAGATGATCACTACCTTGGATGTTTACCTTAC	553	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.806	1.164	1.092	0.714	0.466	0.307
Raw	238.865	234.367	198.563	188.421	45.596	33.123

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_72931.2	1003	2e-24	542 - 601	100	60 / 60	plus	None
MLOC	MLOC_72931.1	1067	2e-24	608 - 667	100	60 / 60	plus	None
JLOC1	JLOC1_48541.2	1010	8e-25	544 - 603	100	60 / 60	plus
JLOC1	JLOC1_48541.1	1076	8e-25	610 - 669	100	60 / 60	plus
Harvest21	ABC48445	613	3e-25	554 - 613	100	60 / 60	plus
Harvest35	U35_47412	613	3e-25	554 - 613	100	60 / 60	plus

Contig Sequence (613 bp)

>U35_47412 613 Hv_44K_v2
TAAACACGTGAGCTCGACCCGTGCTTCCTCGCCGCCGCCGCCGCCGGGCCGTGGCGAGGC
CGCCGTCGACGCCCCCGCCGCCTCTCCGTCCTTTGCTTCCCCGACGCTGCTACCTCTCCA
TCCCCTTCGCTTCTCCCCCCCGCGGCCGGTATCTGTCGCGGGCGCCTCCCATCTCGCTTC
TCCGCCGCTGGCGCTGGCGCGGCGTTCTACCCTTTCCGTGCTTCCCCGCCGCCACCGCCG
CCGCCATACCCATCCAGAGCGACGGGCCTCTTCAGCGTCTGCAGATTCCTTCTCTCTCGG
TGTGAATAGGGCTTGGAAGGTACCTGTTTGGTCACACTCTCAGCGCTGATTGGTGGAAGG
TGTTGTGGTGCTCCGTTGTCTGATATCTCTCTCGAATCGGTAGCGAGGGCGTGGCTGCTG
TTTGTACTTTTTTGAGCTTTGACGGAATGGAGTGCAACAAGGATGAGGCCCTTAGGGCGA
AGGAAATTGCAGAGAGGAAGTTCCAATCCAGGGACCTGCAGGGGGCCAAGAAATTCGCCC
TTAAGGCCAAGGCTCTCTTTCCGGATCTCGAAGGTATTGTGCAGATGATCACTACCTTGG
ATGTTTACCTTAC

Homology of Contig U35_47412 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None