barSeed - Barley Seed Development Database

Probe CUST_32152_PI390587928

Source Contig U35_47413

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_32152_PI390587928	Hv_44K_v2	AGTGTGTCATGTTTGTGGTAAAGCAAACATAGATATTTTCATATAAAATGGGCAGGCAGA	18	GeneList: darkmagenta MasterList: Hydrolysis_Function_Probe_Module

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	7.621	4.852	1.005	0.495	0.907	0.807
Raw	56.644	54.851	10.246	6.365	3.534	3.589

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_4738.7	1705	2e-24	1621 - 1680	100	60 / 60	plus	ABC48447
MLOC	MLOC_4738.6	2395	6e-24	2337 - 2395	100	59 / 59	plus	ABC48447
JLOC1	JLOC1_2987.3	2956	8e-25	1976 - 2035	100	60 / 60	plus
JLOC1	JLOC1_2987.2	2959	8e-25	1979 - 2038	100	60 / 60	plus
JLOC1	JLOC1_2987.1	3320	8e-25	2340 - 2399	100	60 / 60	plus
Harvest21	ABC48447	514	3e-25	19 - 78	100	60 / 60	minus	ABC48447
Harvest35	U35_47413	514	3e-25	19 - 78	100	60 / 60	minus

Contig Sequence (514 bp)

>U35_47413 514 Hv_44K_v2
TTTTTTTTTTTTTTTTTGTCTGCCTGCCCATTTTATATGAAAATATCTATGTTTGCTTTA
CCACAAACATGACACACTTGCCATGATAACAAACATAAATTAACTGTGTATATATGCACA
TGACGAAGCAATGGTGCAAAGGGTCGGAAGCATCACAACGACCACTCACGGATAAGCACC
AACTAATGGATGAGGATACTATCTGTGTTTCAGCATATGTCATGGTATGACTGCAAGTTG
TTCCCAGCAGGTTTTCCAATCTGCAGACAAGCTATGGGAGGGATGGTTGGCGTGAAGAGT
TCCCCAAAAGCTTGCCAACAGAATGGATTGTTTAGGTGGTAGTGCGCTATTTGCACGGGT
TTAAGTTGTACTCCGGTAAGTGTGATCCCTGAACAAGGTGAGCTGTCACTGCATGCAAAA
TGGAGAGGCTTGATTGTAAATGTCCCTCTGATATTCTCATACTGAACGCCTGATACCGCC
ACTGCTGATGTTTGATTTGTGCAGGTTCTTTTGT

Homology of Contig U35_47413 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g45060.1	424	3e-62	protein\|polygalacturonase, putative, expressed
Brachypodium v1_2	Bradi2g44750.2	544	6e-64
Arabidopsis v10	None