barSeed - Barley Seed Development Database

Probe CUST_32151_PI390587928

Source Contig U35_11485

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_32151_PI390587928	Hv_44K_v2	GAATTGCAACTCTCTTTCTGTTCATTTACCTTTGCCTAGTCCTGTGAAAGAAGTTAAAAC	408	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_75180.2	4477	2e-24	4407 - 4466	100	60 / 60	plus	ABC00071 ABC00091 ABC00416 ABC00568 ABC24078
MLOC	MLOC_75180.3	4541	2e-24	4403 - 4462	100	60 / 60	plus	ABC00071 ABC00091 ABC00416 ABC00568 ABC24078
JLOC1	JLOC1_50143.3	1594	8e-25	1535 - 1594	100	60 / 60	plus
JLOC1	JLOC1_50143.2	1817	8e-25	1758 - 1817	100	60 / 60	plus
JLOC1	JLOC1_50143.1	1813	8e-25	1754 - 1813	100	60 / 60	plus
Harvest21	ABC24078	468	3e-25	1 - 60	100	60 / 60	minus	ABC24078
Harvest35	U35_11485	468	3e-25	409 - 468	100	60 / 60	plus

Contig Sequence (468 bp)

>U35_11485 468 Hv_44K_v2
AAGGTTTGGGTGCATGATGATTTGGTGGTAGAGGAAGGCCCCCATATGCGCCGCCACGAA
CACCTTAAGACCGTCTACATCAGCGGGTTCCGGTGCTACGCGGGTCAGAGTAAGCTGGCG
TGTTGTATCTTGGAAAATGCTTGCGTTCTTGAGCACATGAGAATACAGCCACGGTTCCTG
ACCATGACCAGGACATCGCGTTATGATAGCTGGCCCAATGAGGGCGTCAGAGGAAGATTT
TTACCAGAGGCTCGTGAATGGGCACAAGTCACCTCAGAGCGCTTCGGTAAGGTGATCACC
GTCTTAGATGACCCTTCAGAGTGATCATGTCATTATCTATGCCTCTTCAAACTTATTATG
AGAGGTTATTTTGTTTGCCCCCAATGTAGTAGCGTAAAAGCTCGAACGGAATTGCAACTC
TCTTTCTGTTCATTTACCTTTGCCTAGTCCTGTGAAAGAAGTTAAAAC

Homology of Contig U35_11485 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None