barSeed - Barley Seed Development Database

Probe CUST_32143_PI390587928

Source Contig U35_47419

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_32143_PI390587928	Hv_44K_v2	GTCTGTTGGGATATCACCATTTGCTTGTGGATGGTCTACTCGGCAAAGAAATGTTGAATC	546	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_55378.17	4556	2e-24	2524 - 2583	100	60 / 60	minus	ABC00911 ABC17473
MLOC	MLOC_55378.18	4545	2e-24	2513 - 2572	100	60 / 60	minus	ABC00911 ABC17473
MLOC	MLOC_55378.14	4592	2e-24	2727 - 2786	100	60 / 60	minus	ABC00911 ABC17473
MLOC	MLOC_55378.15	4541	2e-24	2676 - 2735	100	60 / 60	minus	ABC00911 ABC17473
MLOC	MLOC_55378.21	1446	2e-24	794 - 853	100	60 / 60	minus	ABC17473
MLOC	MLOC_55378.22	2094	2e-24	1145 - 1204	100	60 / 60	minus	ABC17473
JLOC1	JLOC1_35714.6	1989	8e-25	1021 - 1080	100	60 / 60	plus
JLOC1	JLOC1_35714.5	1993	8e-25	1021 - 1080	100	60 / 60	plus
JLOC1	JLOC1_35714.4	1926	8e-25	1021 - 1080	100	60 / 60	plus
JLOC1	JLOC1_35714.3	1610	8e-25	695 - 754	100	60 / 60	plus
JLOC1	JLOC1_35714.2	1673	8e-25	695 - 754	100	60 / 60	plus
JLOC1	JLOC1_35714.1	1677	8e-25	695 - 754	100	60 / 60	plus
Harvest21	ABC48467	606	3e-25	547 - 606	100	60 / 60	plus
Harvest35	U35_47419	606	3e-25	547 - 606	100	60 / 60	plus

Contig Sequence (606 bp)

>U35_47419 606 Hv_44K_v2
CTGAAGCGGTGCTCAGATTCCCGAGCCCTCCGCTTTTCGGCCGTCGGTCATCGGAGGAGG
CTGCGCGAGGACGAGGAGAGGAGCTCCCATGGCGGAGGCGGCACGGAAGCAGCGGAGCGC
CGCCGCGCCCCGCCCCGTCCGCTGCATCGTGAAGCTAGGCGGAGCGGCCATCACGAACAA
GGGGGAGCTGGAAAGCATCGACGAGGAGAGCCTGCGGTCGGCGTGCGCGCAGCTGCGGCG
GGCCATGTCCGACGGCACCTCCCCGGAGAAGGTTATGGGGATGGACTGGAGCAGGAGGCC
CGGCGATCCGGCCGACCCGGTCGTGGACGCGGAGGGGTTCGCGGGCATGGCGGGGCTGGG
CCTCGACAGCAACTTCGTCGTCGTCCACGGCGCCGGTTCTTTTGGTCACTTCCAAGCAAG
TAGATCTGGAGTACATAAAGGCGGGTTGCATTCAACACTGGTGAAGGCTGGCTTTGTGGC
TACAAGAATTTCAGTGACTTCTCTCAACCAGGAAATTGTTAGAGCCTTGGCAAGAGAAGG
AATACCGTCTGTTGGGATATCACCATTTGCTTGTGGATGGTCTACTCGGCAAAGAAATGT
TGAATC

Homology of Contig U35_47419 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g55890.4	264	2e-93	protein\|amino acid kinase, putative, expressed
Brachypodium v1_2	Bradi2g50820.1	336	2e-93
Arabidopsis v10	AT1G26640.1	332	5e-62	Amino acid kinase family protein \| chr1:9207620-9209766 REVERSE LENGTH=332