barSeed - Barley Seed Development Database

Probe CUST_3213_PI390587928

Source Contig U35_10957

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_3213_PI390587928	Hv_44K_v2	AGTAGAGGACATCCAGGGCAGCATGGCAGCCGCTTTTGGTTCCGGCGTTATCTTCTCTCT	388	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_61199.1	980	7e-23	613 - 672	98	59 / 60	minus	ABC44910
MLOC	MLOC_61199.2	1116	7e-23	613 - 672	98	59 / 60	minus	ABC44910
JLOC1	JLOC1_39987.1	1308	4e-23	466 - 525	98	59 / 60	plus
Harvest21	ABC23557	459	3e-25	389 - 448	100	60 / 60	plus
Harvest35	U35_10957	460	3e-25	389 - 448	100	60 / 60	plus

Contig Sequence (460 bp)

>U35_10957 460 Hv_44K_v2
GGATGGCCTCCTCCTCCTCCACCACCTCGCCGGCGGCGCAGGCGCGCGGCGGCCGAAACC
CGCTGGAGGAGTGGAGCGGGCGGGTGAGGGCGCTGGAGGCGGGGTTCCGCGCGTGGATGG
CGAAGCAGCCCGTCCACGTCNAGGCGGGGGGGGGCGCGGCGGTGGGGGCGGTTCAGGGCG
GGGCGCTCGGGGGCCTCATGGGATCGATCACCGCCGACGGGGGAGCGCCGTGGGTGCCGC
CGCTTCCCCCCAACGCCAACCCGCAGGCCATGGCGTCTTTCAAGCAGGCCCAGGCTTTAG
CTGCTGGCCCGTTGGTGCAAGCGCGGAACTTTGCAGTTATGAGCGGTACGAACGCAGGCA
TATCATGTGTCATGAGAAGGATACGCGGAGTAGAGGACATCCAGGGCAGCATGGCAGCCG
CTTTTGGTTCCGGCGTTATCTTCTCTCTGGTGAGTGGAAT

Homology of Contig U35_10957 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None