barSeed - Barley Seed Development Database

Probe CUST_32137_PI390587928

Source Contig U35_23465

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_32137_PI390587928	Hv_44K_v2	ACTAGGGATCAGTCCATATCTGCTGCTGAACCTTCAGTGTCATCTCCATCAAAACTAGCA	536	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.894	1.438	1.099	0.793	0.748	0.428
Raw	227.988	251.807	181.165	187.031	67.124	43.039

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_64198.3	1590	2e-24	716 - 775	100	60 / 60	minus	None
MLOC	MLOC_64198.2	2354	2e-24	1479 - 1538	100	60 / 60	minus	None
MLOC	MLOC_64198.1	2266	2e-24	1413 - 1472	100	60 / 60	minus	None
MLOC	AK251476.1	2320	7e-23	984 - 1043	98	59 / 60	plus	None
JLOC1	JLOC1_42125.1	2696	8e-25	974 - 1033	100	60 / 60	plus
Harvest21	ABC19206	672	3e-25	537 - 596	100	60 / 60	plus
Harvest35	U35_23465	672	3e-25	537 - 596	100	60 / 60	plus

Contig Sequence (672 bp)

>U35_23465 672 Hv_44K_v2
CCTCGTGCCTGAATTCGCACGAGGCGGGTTTTGACGGTGTCCGGAGGTGGCCATGTGCAC
CTGGAAGACTATGTAGATGTATGGTCATAACTAACTTGATCGATGAAAAGGGAGCTCAGT
TCTCATCAAGAGGAAGCGTGAACGTTAAAGCTGATGATGACAGCGATCTTCTTTCGAAGC
CCCCGCAGAGGCCAGTCCGGCTGAATGGGCCACCAACAAGCATGGATATAGCAACAACAT
CAGCACCTGCCAGGAAGCCAGCAGGCGTAACATTGCAAGACCGAGAGAAGGTCCGGGAGT
CATTGGATGAGGTGTTGCAGAAGGCAGAGAAACTTGAGGCCTCGAGCTCCAGAAATGTGG
ATGGTGAGAACCGTGCATTGAGACGGAATGATGTGGCAAAGCCTAATAGTTCAGTGCCAG
TCGTGGTGGAGGAGGGCTCGAATTCCAAAAGGACAAAAACACTAAAGAGTGTATGGAGAA
AGGGGAACCCTGTGCCCACTGTACATAAGGTGATTAGAGATCGTCCACACACTGAAACTA
GGGATCAGTCCATATCTGCTGCTGAACCTTCAGTGTCATCTCCATCAAAACTAGCACCTC
ACCTACAAACAAGACCTTCTGTAGCACCACCACCTCGTCGGCCTGTCAAAGCTGACACAT
CAAAGGAGAAAA

Homology of Contig U35_23465 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os05g49970.3	542	6e-75	protein\|translation initiation factor IF-2, chloroplast precursor, putative, expressed
Brachypodium v1_2	Bradi3g20520.1	966	6e-98
Arabidopsis v10	None