barSeed - Barley Seed Development Database

Probe CUST_32133_PI390587928

Source Contig U35_23469

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_32133_PI390587928	Hv_44K_v2	CTTTCTTTTGTCGTCTTAGCGGTGATTGTCGGCCTTTTGCTTCTATGTAGAAATGCCAGC	575	GeneList: red MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.141	1.465	1.169	0.822	0.361	0.495
Raw	2093.710	4185.903	2941.523	3256.547	494.100	748.126

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_9892.1	4218	2e-24	3981 - 4040	100	60 / 60	plus	None
JLOC1	JLOC1_6430.1	4348	8e-25	4043 - 4102	100	60 / 60	plus
Harvest21	ABC19988	650	3e-25	576 - 635	100	60 / 60	plus
Harvest35	U35_23469	650	3e-25	576 - 635	100	60 / 60	plus

Contig Sequence (650 bp)

>U35_23469 650 Hv_44K_v2
GGTGCTTTATCTTCTGATGGCCAACATATACCATACCGGAACCACAAGTTGACAATGCTT
ATGAGTGATTCGCTTGGAGGCAATGCAAAAACATTGATGTTTGTGAATGTTTCACCAGCG
GAGTCAAACTTGGAGGAGACTTACAACTCACTCATGTATGCTTCACGAGTACGCTGCATT
GTGAACGACACGAGCAAGCACGTTTCCCCCAAAGAAATCATGCGGTTGAAGAAGCTGATT
TCTTATTGGAAGGAGCAAGCAGGCAAGCGGAGCGAGGGCGATGAACTGGAGGAAATACAG
GAAGAGAGGATATCAAAAGAGAAAGCCGACACCCGGTTGGCCGCTTGAGGCTGAGATACA
ACCGCTGACGCCTTCCCCCCTGAATGCACCTGGTTTCCGTTCTCACACCCAGCCGCAGAG
GTGACCCAGTGCTTCGCCGAAGTAGTGGATGGAATGTTTCTGAAAATGTATAGTTAGCGA
TTATATATTATGGCGGGGGCGCCTGTTTGTACAAAGAGCCTGTAGTATACATTCATAGGA
GAAGGGATGAAGAGTTTTTAGGAGAGAAAATCCCACTTTCTTTTGTCGTCTTAGCGGTGA
TTGTCGGCCTTTTGCTTCTATGTAGAAATGCCAGCGTTGGGTACGGCTAC

Homology of Contig U35_23469 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os04g57140.1	1196	4e-60	protein\|kinesin motor domain containing protein, putative, expressed
Brachypodium v1_2	Bradi5g25390.1	1271	1e-62
Arabidopsis v10	None