barSeed - Barley Seed Development Database

Probe CUST_32120_PI390587928

Source Contig U35_47421

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_32120_PI390587928	Hv_44K_v2	TTCAATGCGAGCGTGTGCAACAACAAGCTCGTCGGAGCCAAGGCATTCATTGCGGTGGAC	518	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_63510.1	2817	2e-24	664 - 723	100	60 / 60	plus	ABC09571
MLOC	MLOC_63510.2	2122	2e-24	535 - 594	100	60 / 60	plus	ABC09571
JLOC1	JLOC1_41605.1	1781	8e-25	1182 - 1241	100	60 / 60	minus
JLOC1	JLOC1_41606.1	2497	8e-25	552 - 611	100	60 / 60	plus
Harvest21	ABC48470	628	3e-25	519 - 578	100	60 / 60	plus
Harvest35	U35_47421	628	3e-25	519 - 578	100	60 / 60	plus

Contig Sequence (628 bp)

>U35_47421 628 Hv_44K_v2
CTTTGCCCTCCATACTCATCGTGCTTGTGTGCCTGTTTCACCCCGTGCACTCCAGTGCAT
TCCCAAATCACCACCATGCCCCATCACACTCAACCTACATCGTCCTAGTTGATCGCATCT
CAAAGCCGACGTTGTTCGTAACCGTGGATCAGTGGTACACTTCGCTCGTCGCCAACACGA
AATCCCCTCCTTCGACTGCGAGCATCGTGCATACATACAGCACGGTGCTGCAGGGATTTG
CAGTTGGCCTCACGGATGCGGAGGCCCGGCACATGTCCGAGCTTGCCGGCGTCTCCGGCG
TTTTCAAGGAGAGGGTGTACCGCACCCACACGACGAGGACGTCGACCTTCCTCGGCCTCG
ATCCTCTTCACGGAGCTTGGCCGGAGTCCGACTTCGGCGACGGCGTCATCATCGGCTTCG
TCGACACAGGAGTATGGCCGGAGCACCGCAGCTTCGACGACGCCGGGCTTGCTCCTGTCC
GCTCGTCTTGGAAAGGCGGCTGCGTGGAGAGCAACGATTTCAATGCGAGCGTGTGCAACA
ACAAGCTCGTCGGAGCCAAGGCATTCATTGCGGTGGACGGCGACATCACCGCGCGGGACA
CCTACGGCCATGGCACGCACGTGTCGTC

Homology of Contig U35_47421 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os07g39020.1	771	2e-51	protein\|OsSub53 - Putative Subtilisin homologue, expressed
Brachypodium v1_2	Bradi1g08450.1	380	1e-63
Arabidopsis v10	None