barSeed - Barley Seed Development Database

Probe CUST_32118_PI390587928

Source Contig U35_47422

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_32118_PI390587928	Hv_44K_v2	ACAATTCTAGTCTTCCTCTCCGTTTACACATTCGGGATGCTCATCATGGCATCATCAACG	384	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_3766.4	1946	2e-24	512 - 571	100	60 / 60	plus	ABC22626
MLOC	MLOC_3766.6	1992	2e-24	1293 - 1352	100	60 / 60	minus	ABC22626
MLOC	MLOC_3766.5	2117	2e-24	1293 - 1352	100	60 / 60	minus	ABC22626
MLOC	MLOC_3766.1	2378	2e-24	1365 - 1424	100	60 / 60	minus	ABC22626
MLOC	MLOC_3766.2	2472	2e-24	1365 - 1424	100	60 / 60	minus	ABC22626
MLOC	MLOC_3766.3	2167	2e-24	1365 - 1424	100	60 / 60	minus	ABC22626
MLOC	MLOC_3766.7	1901	2e-24	1207 - 1266	100	60 / 60	minus	ABC22626
MLOC	MLOC_3766.8	2112	2e-24	1207 - 1266	100	60 / 60	minus	ABC22626
JLOC1	JLOC1_2269.3	2341	8e-25	816 - 875	100	60 / 60	plus
JLOC1	JLOC1_2269.2	2130	8e-25	605 - 664	100	60 / 60	plus
JLOC1	JLOC1_2269.1	2022	8e-25	497 - 556	100	60 / 60	plus
Harvest21	ABC48472	593	3e-25	385 - 444	100	60 / 60	plus
Harvest35	U35_47422	593	3e-25	385 - 444	100	60 / 60	plus

Contig Sequence (593 bp)

>U35_47422 593 Hv_44K_v2
TTCACTCAGACACATCGAGAGAGTCAGATGGTCATGGAAGCAGCAGATGAGGAGAGGCCA
CTGCTGAACCATCTTTGCCGGCCTCCACAGCCACAGGAAGAATGCTCAAGATACACCGGT
GATGGAACAGTTGATATCAACGCACAGCCTGCTCTCAAGCAGAGCACCGGCAACTGGAGA
GCATGCTTCTTCATTCTAGGTGCCGAATTCAGCGAATGCGTGTGCTTCTTCGCCGTCTCG
AAGAACTTGATCACCTACCTTACGACGGTGCTCCACGAGAGCAACGTCGGCGCCGCGAGG
AATGTGTCCACCTGGGTCGGCAGCTGCTTCCTCACGCCGGTCATCGGAGCCTTCTTGGCC
GACTCTTATTGGGGAAGATATTTGACAATTCTAGTCTTCCTCTCCGTTTACACATTCGGG
ATGCTCATCATGGCATCATCAACGGCGCTTCCGCTGCTCCTGCCACGTTCGTCCGACGAG
GGCAGTGGTTTCCACCGTGCCGCAGTGTACCTGGGGCTCTACCTCGTCGCCCTCGGCACC
GGCGGCATCAAGCCCTGCAGCGCGGCCCTCGGGGCCGACCAGTTCGACGGCGC

Homology of Contig U35_47422 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os10g02210.1	580	4e-74	protein\|peptide transporter PTR2, putative, expressed
Brachypodium v1_2	Bradi1g21010.1	586	6e-82
Arabidopsis v10	None